Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq113 361 8e-95 seq47 111 2e-19 seq19 93.3 6e-14 >seq113 Length=1687717 Score = 361 bits (400), Expect = 8e-95 Identities = 1256/1949 (64%), Gaps = 33/1949 (2%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| |||||||||| ||||| || | || | || || || || || Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| ||||| || | ||| | || ||||| || || || || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || | || || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | |||||| | ||| || || || || | ||||| ||||| || Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| | ||| | ||||| || ||||| || ||||| | || || Sbjct 900116 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 900175 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || | || || | || || || || || || || || || | Sbjct 900176 TCGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 900235 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 ||||| || || || || |||| | ||||| ||| || || | || || || ||| Sbjct 900236 TAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 900295 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | ||| || || ||||| ||||||||||| ||||| || || || || || || Sbjct 900296 TAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 900355 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | | | || || || |||||| | || || || || || || |||| || || Sbjct 900356 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 900415 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCA 69249 | || | ||| | |||||| |||| | ||| ||| ||| | || || Sbjct 900416 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 900475 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || ||||| || ||||| ||||| || ||||| | Sbjct 900476 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTC----GTC 900531 Query 69310 TTTGCATATTGTATT-----ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 |||| || |||| | || || || || || || || || ||||| || ||||||| Sbjct 900532 CTTGC-TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGAT 900590 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 | ||||| || ||||| |||| ||||| || ||||| | || |||| || || |||| Sbjct 900591 TCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTT 900650 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC 69484 | |||| || ||||| || | | ||| | | ||| || | || ||| | Sbjct 900651 CTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCC 900710 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | ||| || |||||| || || || ||| || || || ||||| ||||||| Sbjct 900711 TCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCA 900770 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 || || || || |||||||||| ||||| | || | | || || || |||| Sbjct 900771 GCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCA 900830 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTC 69664 | || || || || ||||| || || || || || |||| || | || || |||| Sbjct 900831 TGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTC 900890 Query 69665 CTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | || || || || || || || || || | | ||| | ||||| || || || || | Sbjct 900891 CCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACA 900950 Query 69725 TCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTAT 69784 | || | | | || |||| ||| || || |||||||| | || | || ||||| || | Sbjct 900951 TGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGT 901010 Query 69785 AGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTC 69844 | || |||| ||| || | | || || || ||||| || || | || || || | Sbjct 901011 AAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTCC 901070 Query 69845 CTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAG 69904 | | | | ||| || | | | || || ||||| || ||| ||||| || | Sbjct 901071 CCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGG 901130 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 | ||| | |||| ||||| || || ||||| ||||| ||||| ||||| || || | Sbjct 901131 CGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGA 901190 Query 69965 AACAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 | ||||| |||| || | ||| | ||||| ||||| || | || || || ||||| Sbjct 901191 AGCAGCTGGACAGCTGCGGCCTGT-TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 901249 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||| ||||| || || || ||| ||| |||||| | Sbjct 901250 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCG 901309 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || || | ||| | ||| ||||| || || || | ||| ||| Sbjct 901310 TGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTG 901369 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || || | |||||| || |||||||| || || ||||| ||||||| || || ||| Sbjct 901370 ATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCT 901429 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACA 70263 || || || || || | || || || || || | | ||| || || | Sbjct 901430 CTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC-----GA 901484 Query 70264 GTAGGT-----GAGATAAT--CGGAG-ATCGTTTACCATTTTTAGGATTAACATAGTTGA 70315 || || || || || |||| ||||| || || || | |||||| Sbjct 901485 GTGTGTCTTTCGAAATCATGGAGGAGTGGCGTTT---GTTCAGGGGGTTGATGTAGTTGT 901541 Query 70316 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGG 70375 | | || ||||| || || || || | || || || || ||||| || || || | || Sbjct 901542 ACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGG 901601 Query 70376 CTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTT 70435 | || | ||||| || || || ||||| || | | || || ||| || || || | Sbjct 901602 CGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCT 901661 Query 70436 CCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTT 70495 |||| || | ||| || | || | ||| || || ||| | || | || || || || | Sbjct 901662 CCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCT 901721 Query 70496 TCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-A 70554 |||| | || | | || || | || || |||| || || || || || |||| Sbjct 901722 TCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGG 901780 Query 70555 ATACGAGATGTAATTTTATCAAACATAAC 70583 || |||||||| ||||| || ||||| || Sbjct 901781 ATGCGAGATGTGATTTTGTCGAACATGAC 901809 >seq47 Length=2629205 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || ||||||| || ||||| |||||||||||||||||| || Sbjct 775300 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 775359 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || ||||| |||||||||| || | || ||||||||||| |||| || || || || Sbjct 775360 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 775418 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||||||||| || || | | || | |||||||| ||||| | ||| |||| Sbjct 774735 TAGGTTTCATAAGGGCCAAGCTCTGCTGCCAACTCACAACTGGCCTCCAGGGCAGCGTAG 774794 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || || || | | ||||| || || ||| | || || || ||||| Sbjct 774795 TACATGGTCTCAAAGATGTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCAAACGGATAG 774854 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | || ||||| ||||| |||| ||||| || ||||| || || || || || | | Sbjct 774855 CGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGCCTGTGACGC 774914 Query 69136 TTATTTGAACTTTCAGC 69152 || || || |||||||| Sbjct 774915 TTGTTAGACCTTTCAGC 774931 >seq19 Length=3626725 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| || || ||||| | ||||| || | | || |||||||||| || | ||| | Sbjct 2022406 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 2022347 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || |||||||| || ||||| |||||||||||||| || |||||||| | Sbjct 2022346 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 2022287 Query 39759 CAACAA 39764 | |||| Sbjct 2022286 CCACAA 2022281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686840100533640