Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq162 96.9 3e-15 seq50 96.9 3e-15 seq112 95.1 1e-14 >seq162 Length=1324660 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 87331 GCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAAC 87390 ||||||| ||| || |||||| | || || ||||| || ||| |||| || |||| ||| Sbjct 907189 GCTCCCATTTTGCTGAAATCTCTTTTGGACTGAAAGGTGTAGGCTGTTAATACAGCGAAC 907248 Query 87391 ACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGT 87443 |||||||| || | ||| | | ||| ||||| |||||||| ||||||||||| Sbjct 907249 ACAGCACAGGTGAGAAACAAAGCTTGCAGTATTGTGGAGTAATCATAGAAGGT 907301 >seq50 Length=2598561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || || || | || ||||| ||||| ||| | || || ||||| Sbjct 118072 GATGGCGCTGCCCCCCTGCCACGCACTCTGCCAGTTCTACGTGTGCGACGGCGAGCTGTC 118131 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||| |||| || | |||| ||| |||||| ||||||| || || ||||| || || Sbjct 118132 GTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGGGTGCCTTTCAACATCGCCAG 118191 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || || |||||||||||| |||| Sbjct 118192 CTATTCACTTCTTACCTACATGATTGCACACATTAC 118227 >seq112 Length=1692099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 ||||||| || |||||||||||| |||||| |||||||||||||| ||| | || | Sbjct 686048 CTCTGACGAATGCCCAGGCATCTCGCTCTGAGGCAAACTTCTTAAAGGAGGCAGAAGGAA 685989 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| |||||||||||||| || |||| Sbjct 685988 ATTTGTCCACTTGGCTCTTACACTCGTCCC 685959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||| || ||| || |||||| |||| |||||| || |||||| Sbjct 688676 CCAGACCACCTCCACCTGTCCATTCAGCCTGTCCAGTTTCACAAAGTCGTCTTTGTTGGT 688617 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 || |||||| ||| | || ||||||||||||| ||||||||||||| ||||| | | Sbjct 688616 AATCTGACC-TCCAGATTTCAACCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGG 688558 Query 77430 TCACACC 77436 ||||||| Sbjct 688557 TCACACC 688551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397417243196005