Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq113 208 1e-48 >seq113 Length=1687717 Score = 208 bits (230), Expect = 1e-48 Identities = 959/1494 (64%), Gaps = 48/1494 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| ||| || || ||| | ||||| |||| ||||| |||||| Sbjct 899878 CTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 899937 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | ||| | | ||||||||| ||||||| | || | Sbjct 899938 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 899997 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || |||||||| | || || || Sbjct 899998 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAG 900057 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 900058 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 900117 Query 110854 C-TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | |||| || || |||||||||| |||| || | || | | | || || || | Sbjct 900118 CGTTGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTT 900176 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 110972 | | || || |||| || | | | |||| || |||||||| |||| | || | Sbjct 900177 CGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCAT 900236 Query 110973 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 111024 |||||| || |||||||| | |||| || | | | ||||| || Sbjct 900237 AATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 900288 Query 111025 AAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 111083 ||| | || || || || || || |||| || | || || || || | || || | Sbjct 900289 AAAGGGATAACG-CATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCG 900347 Query 111084 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 111143 | ||||| ||||| || ||| | | || || || || || | || |||| || | Sbjct 900348 GCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAA 900407 Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAA 111200 | ||| | || || ||||| | || | | ||| | ||||| | | ||| Sbjct 900408 CCTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCAT 900464 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 |||| || ||| |||| ||| | || |||| || |||| ||||||||| | Sbjct 900465 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCG 900521 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 900522 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 900581 Query 111321 TCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 111380 | |||| ||||| ||||| |||||| ||||||| ||||| ||||||| |||||| |||| Sbjct 900582 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 900641 Query 111381 TCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATG 111439 |||| || || ||||| || | || || || | ||| | | | | | || || Sbjct 900642 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACAC 900701 Query 111440 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 900702 GC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 900759 Query 111500 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 || || || || || | | | ||||| | || ||||| | | | ||| Sbjct 900760 GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTC 900819 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 900820 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 900879 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 900880 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 900938 Query 111678 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 111733 |||| || || | |||| | || |||| | |||| | |||| ||||| ||| Sbjct 900939 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCC-CCCTGATCAACATAACGC 900997 Query 111734 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 111793 |||||| ||| | || | | |||||| | | || | || ||||| || || Sbjct 900998 GCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCG 901057 Query 111794 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 111850 || || | ||| ||| | || | || || || ||||| || ||||| Sbjct 901058 GCGAT-GTAGCTCCCCGTGGATCTAATGCAGC-TGACTG-CCACGCCAATCCCTCCAGCT 901114 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 901115 GATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCC 901174 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 111970 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 901175 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 901234 Query 111971 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 112029 || || | ||||| ||||| || | | |||| | || ||| ||||| | ||| | Sbjct 901235 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGC 901293 Query 112030 ATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || || ||||||||| || | || |||| ||||| ||||| ||| || Sbjct 901294 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 901347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627969188949600