Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq113 199 5e-46 seq2861 86.0 8e-12 seq230 86.0 8e-12 seq47 84.2 3e-11 seq19 82.4 9e-11 >seq113 Length=1687717 Score = 199 bits (220), Expect = 5e-46 Identities = 892/1386 (64%), Gaps = 34/1386 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 899972 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 900031 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || | || || |||||||| | | || | || || ||| Sbjct 900032 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 900091 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 || || ||| ||| |||| | | | ||| | | || |||||| || ||||||| Sbjct 900092 TTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAG 900150 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--- 118417 || || | | | ||||| || || | ||||| || | ||| || ||| || Sbjct 900151 AATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCC---AAGCTCGGCGGC 900207 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 || ||| ||||||| || | || || | |||||| || ||||| || | || | Sbjct 900208 CAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA- 900266 Query 118478 TGCC-TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAG 118534 || ||| |||||| | ||||| | || ||| || || || |||| || | Sbjct 900267 -GCAGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAA 900324 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCAC 118594 || ||||| |||| || || || | || | ||| || ||| ||| || ||||| Sbjct 900325 TCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCAC 900384 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 || || | || | ||||||||| | || | || || | || || || | Sbjct 900385 CGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG- 900443 Query 118655 ATGAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 ||| |||| || ||| || | || ||| |||| ||| | || |||| Sbjct 900444 ATGCCAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGA 900500 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 || |||||||| || || | ||| ||||| ||||||||| | |||||||||| Sbjct 900501 CAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGC 900560 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 | | ||| | ||| |||||||||| |||| || || ||| |||| || |||| Sbjct 900561 AGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCAT 900620 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 | ||||| | |||||| |||||||| || || || || |||| || || || | ||| | Sbjct 900621 CTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATA 900680 Query 118894 CATCGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGG 118952 | ||| ||| | || || | | |||||| | ||| || | |||||||| Sbjct 900681 GCTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGT 900739 Query 118953 GCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGA 119012 |||||||||| || ||| | ||| ||||| || | | || || | || Sbjct 900740 TCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGG 900799 Query 119013 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 119072 ||||| | | | ||| |||||||||||||||||||| |||||||| || || || Sbjct 900800 GACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAG 900859 Query 119073 AAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 119131 || || |||| || ||| || | | ||| || || || ||||| ||||| Sbjct 900860 AACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTC 900918 Query 119132 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGAC 119187 | | ||| |||||| || |||||||||| |||| | || ||| | | | Sbjct 900919 AAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCC 900978 Query 119188 CAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT 119247 | |||| | ||||| | ||| ||| ||| | || | | |||||| | || || | Sbjct 900979 CC-CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGT 901037 Query 119248 CGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCGTGGATGTG 119305 ||| |||||| || || || | ||| ||| | || | || || Sbjct 901038 TGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC- 901095 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 || ||||| || || || | || ||||| | ||||| | | | || || ||||||| Sbjct 901096 CACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGAT 901155 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 ||| ||||| |||| |||| | |||| ||||||||||| |||| || |||||| Sbjct 901156 CCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTT 901215 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGT 119484 || ||||| |||||||| || || | |||||| ||||| || | | |||| | || Sbjct 901216 GGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGT 901274 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 ||||||||| | ||| || || || |||||| || || | | |||| ||| | Sbjct 901275 TGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGA 901334 Query 119545 ACATGT 119550 ||||| Sbjct 901335 GCATGT 901340 >seq2861 Length=8583 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 6308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 6249 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 6248 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 6199 >seq230 Length=973959 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 832638 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 832697 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 832698 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 832747 >seq47 Length=2629205 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| || |||||||||| || || ||||||| || || | | | |||||| Sbjct 775275 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATT--TGATGGTG 775332 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||| | ||||| |||| |||| || ||||||||||||| ||||||||| || Sbjct 775333 CCCAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTA 775392 Query 118857 CCCGTCTCCGTTTGGGACT 118875 || || || || || |||| Sbjct 775393 CCAGTTTCTGTCTGCGACT 775411 >seq19 Length=3626725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||||| || || ||| ||| || || ||||| | |||| ||||| Sbjct 2022406 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 2022347 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||| | || ||| |||||| |||||||||||||| || |||||| Sbjct 2022346 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 2022297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618373348749560