Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq113 203 4e-47 seq230 87.8 2e-12 seq2861 84.2 2e-11 seq269 82.4 8e-11 seq227 82.4 8e-11 >seq113 Length=1687717 Score = 203 bits (224), Expect = 4e-47 Identities = 526/785 (67%), Gaps = 30/785 (4%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC--ACGCGTGTCCGTGAGACGTA 53250 ||||| | || || |||| |||||||| |||| || | || ||| ||||| || Sbjct 901334 TCATGAGGGTGGCTGTGGGAATCCACGG-GACGGATATCGAAGCA-GTCATCGAGACCTA 901277 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | || | |||| || || |||||| | || ||||| ||||| ||||| || Sbjct 901276 CAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAAC 901217 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 || || ||| |||| |||||||||||| | || |||||||||||| ||||| || Sbjct 901216 CAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGG 901157 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| ||||| ||| | || |||| ||||||||| | | || || || || | Sbjct 901156 GATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGT 901097 Query 53431 -CCA--CTGCTCGA--ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTC 53485 || | ||| | | ||| | | | | || ||| || || || ||| Sbjct 901096 GGCAGTCAGCTGCATTAGATCCACGGGGA-GCTAC----ATCGCCGGCACCAATGGCTGT 901042 Query 53486 GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 || | || |||| || ||| | | || | ||||||||| || || || || | ||| Sbjct 901041 TCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 900982 Query 53546 GGTGGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 || ||| | | ||| || | |||||||| ||||| ||||| |||||| ||| Sbjct 900981 GG----GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGA 900926 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | || || || |||||| ||| ||| | || ||| ||| | | || Sbjct 900925 TGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGCCAGGGA 900866 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 |||||| ||| || |||||||| || |||||||||||| | ||||||||| |||| | Sbjct 900865 CCTGTTCTAC-GCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACGAAG 900807 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAG 53779 | |||| ||||||||| ||| ||| |||||||| || | | ||| || || |||||| Sbjct 900806 ACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTG-CTGGGGGGAGGAG 900748 Query 53780 TTTAACGAGATGT--ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | || | | | | || | | || |||| | ||| ||| |||| Sbjct 900747 TTTGAAGAACTCTACACCAGATATGAGAAG--GAGGGGAGGGTGAAGCGTGTGGTGAAGG 900690 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || ||||| |||||||| || || ||| || || || |||||||||||| Sbjct 900689 CTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGG 900630 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGA 53957 |||||| ||| | |||| ||||||||||||| |||| | ||| |||||| | | Sbjct 900629 TCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCA 900570 Query 53958 GCAAC 53962 ||||| Sbjct 900569 GCAAC 900565 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| || | |||||||| || || || || || |||||| |||||||||||||| | Sbjct 900058 CCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 899999 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| |||||| || | || |||||| || Sbjct 899998 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGAT 899939 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG-CAGA 55643 ||||| ||||| |||| |||||| |||| Sbjct 899938 CGTCAACCCCCACCTGCTCAAAGACCTGACAGA 899906 >seq230 Length=973959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 831747 TACTCACCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 831806 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 831807 AAGTCAAAAGGGTTCT 831822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 823262 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 823203 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 823202 AAGTCAAAAGGGTTCT 823187 >seq2861 Length=8583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 7199 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 7140 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 7139 AAGTCAAAAGGGTTCT 7124 >seq269 Length=834266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 117440 CTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC 117499 ||| |||| ||||||||||| |||| | ||| ||||| |||| |||||||| |||||| Sbjct 729757 CTCACCTCTCCATGGTGATAGGCCGACATCTCAGCCACTGAGCCTGCCAGCTGTGCCACC 729698 Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559 |||| ||| | | |||| |||||| || || | |||||| | ||||| ||| Sbjct 729697 TTCACCTCTCGCTTGTCGTTCCTCTTGAAACAACAGTACAACACCTTCCTCTGACCTGGT 729638 Query 117560 TTCAGACC 117567 ||||| || Sbjct 729637 TTCAGTCC 729630 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC-TGCCAGCCGCGTTCCAAACTG 152087 |||||||||||||| | |||||| | ||||||||||| ||| | | | ||||||||||| Sbjct 730252 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCGTGCAATCTG-GTTCCAAACTG 730194 Query 152088 T-CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 | ||||| |||| | ||| || | ||||||| ||||| || ||||| || ||| Sbjct 730193 TCCCAGA-GGCTGCAAGAGATTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 730139 >seq227 Length=1018910 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || ||||| || || ||| | || ||||| || || Sbjct 936569 GTGAAGATGTAACGAGGACTGGCTGCATCTTTTCCTCCATTGATGCGAGTACCAAACTGA 936628 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||| ||| || Sbjct 936629 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGTGCCAGGTTCACT 936688 Query 117425 ATCGT 117429 || || Sbjct 936689 ATGGT 936693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547161271559800