Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq50 145 6e-30 >seq50 Length=2598561 Score = 145 bits (160), Expect = 6e-30 Identities = 138/175 (79%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||||||| || || |||||||||||||| || ||||| ||||| ||||| Sbjct 117420 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 117361 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 |||||||| |||| ||| || ||||||| |||||| | || |||||||| || Sbjct 117360 ACCCTCTTCTCTGTCAGTGAACCCAAGGTTGTCCAGAAAGTCCCGAGACCCGTTGGCATC 117301 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 |||||| || || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 117300 CCAGATTTTCACTCCTTTTTCTGACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 117246 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| || || || || |||||||||||||| || || Sbjct 118233 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGC 118174 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| | ||||| || | || | |||||| ||||||||||| ||||| ||||||| | Sbjct 118173 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 118114 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| ||||| || | |||||||| || || || ||||| Sbjct 118113 ACGTAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 118073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406270779784092