Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq50 123 2e-23 >seq50 Length=2598561 Score = 123 bits (136), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || |||||| ||||||||| ||||| |||||| | |||||||| |||||||| |||| Sbjct 118061 GACCTCCCTAGGATGGCGCTGCCCCCCTGCCACGCACTCTGCCAGTTCTACGTGTGCGAC 118120 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || |||||||| || ||||| || || || || | || ||||| ||||||||||| || Sbjct 118121 -GGCGAGCTGTCGTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGGGTGCCTTT 118179 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || || | || || || |||||||| || || Sbjct 118180 CAACATCGCCAGCTATTCACTTCTTACCTACATGATTGCACA 118221 Score = 123 bits (136), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || || || | || || || |||||||| ||||||||||| ||| Sbjct 118221 TGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGCACCCCTAATCCC 118162 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 || || | || || || || ||||| || |||||||| || |||| |||||||| || Sbjct 118161 ATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCC-GTCGCACACGTAGAACTG 118103 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||| | |||||| ||||| ||||||||| |||||| || Sbjct 118102 GCAGAGTGCGTGGCAGGGGGGCAGCGCCATCCTAGGGAGGTC 118061 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || ||||| |||||||| || |||||||||| |||||||||||||| | |||||| | Sbjct 117286 GGAGTGAAAATCTGGGATGCCAACGGGTCTCGGGACTTTCTGGACAACCTTGGGTTCACT 117345 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 | || ||||| ||| | || || || || || ||||||||||| |||||||| || Sbjct 117346 GACAGAGAAGAGGGTGACCTAGGACCTGTGTATGGTTTCCAGTGGAGGCACTTTGGTGCA 117405 Query 34442 GAGTA 34446 ||||| Sbjct 117406 GAGTA 117410 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| || || || || || | ||| ||||| || Sbjct 117410 TACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCTTCT 117351 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| | |||||||||||||| |||||||||| || |||||||| ||| Sbjct 117350 CTGTCAGTGAACCCAAGGTTGTCCAGAAAGTCCCGAGACCCGTTGGCATCCCAGATTTTC 117291 Query 7019 ACCCC 7023 || || Sbjct 117290 ACTCC 117286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448217568156720