Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6778 145 6e-30 seq50 141 7e-29 seq7128 129 4e-25 seq891 113 3e-20 seq2649 89.7 4e-13 >seq6778 Length=1260 Score = 145 bits (160), Expect = 6e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 69075 GTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTAT 69134 |||||||| |||||||| || || | |||| ||| | ||||||||||||||| Sbjct 479 GTGAACGGCTGGGGAAAATTCTACCTTCCCAAGATCGTAAACATGCAGGTCATCGGTGTG 420 Query 69135 GTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAG 69194 ||| ||| || | | | ||||||| |||| || |||||||||| |||||| | ||| Sbjct 419 GTGGAGGGCACCTCGTGTCCATGTGACGAGCTCGTGTTGATGACCTGTGAGGACAAAAAG 360 Query 69195 GTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGG 69254 |||||| ||| || ||||| ||||||||| |||||||| | || | | || | | Sbjct 359 CTGTACGCCTACGATGGAGAGGAGCTGCATCTGGTGGCTTCCAGTTTCCAGCAACTACGT 300 Query 69255 GAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACAT 69314 || ||| ||| ||||| |||| | ||||||| || |||| |||||||||||| || Sbjct 299 GACAAAGACCTAGAGTATCCAGCATCCAAGAGCTACTACAATGGAGAGGCCTTCAAAGAT 240 Query 69315 ATG 69317 ||| Sbjct 239 ATG 237 >seq50 Length=2598561 Score = 141 bits (156), Expect = 7e-29 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||||||| || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 117420 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 117361 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||||| |||| ||| || ||||||| |||||| | || |||||||| || Sbjct 117360 ACCCTCTTCTCTGTCAGTGAACCCAAGGTTGTCCAGAAAGTCCCGAGACCCGTTGGCATC 117301 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 |||||| || || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 117300 CCAGATTTTCACTCCTTTTTCTGACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 117246 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| || || || || |||||||||||||| || || Sbjct 118233 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGC 118174 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| | ||||| || | || | |||||| ||||||||||| ||||| || |||| Sbjct 118173 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 118114 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| ||||| || | |||||||| || || || ||||| Sbjct 118113 ACGTAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 118073 >seq7128 Length=1182 Score = 129 bits (142), Expect = 4e-25 Identities = 155/205 (76%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 69117 ATGCAGGTCATCGGTTATGTGACGGG-AACTCCATACCAATGTGACCAGCTTGTCCTGAT 69175 |||||||| || ||| || | ||| ||||| ||| |||||| ||||||| ||||| Sbjct 172 ATGCAGGTTATTGGTGTGGTAAAGGGCAACTCACGTCCA-TGTGACGAGCTTGTGCTGAT 230 Query 69176 GACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAA 69235 ||| || |||||| | ||| ||||||||||||||||||| ||||||||| |||||||| Sbjct 231 GACGTGTGAGGACAAAAAGCTGTACGGCTATGACGGAGAGGAGCTGCATCTGGTGGCTTC 290 Query 69236 CTGT---CTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTA 69292 | || ||| | | ||| | || | | |||| ||||| |||| | || |||| || Sbjct 291 CAGTTTCCTGAAAC-TATGTGACAAAACG--ATAGAGTATCCAGCATCCAAGCGCTACTA 347 Query 69293 TCATGGGGAGGCCTTCAAACATATG 69317 |||| |||||||||||| ||||| Sbjct 348 CAATGGAGAGGCCTTCAAAGATATG 372 >seq891 Length=144707 Score = 113 bits (124), Expect = 3e-20 Identities = 196/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 69040 TTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATA 69099 |||||||||| | || ||||| | | ||||||||||| ||||| || || || Sbjct 3128 TTGAGGACACCGTTTACAAAGATAATTTTCTTGTGGTGAACGGTTGGGGGAAATTCTACC 3069 Query 69100 TCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGT-GACGGGAACTCCATACCAATGT 69158 | || | | || || |||||||| || ||| || || || | ||| | ||| ||| Sbjct 3068 TTCCGAAGGTTGTAACCATGCAGGTTATTGGTGTGGTCGAGGGCATCTCGTTCCCA-TGT 3010 Query 69159 GACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAG 69218 || ||||| || ||||||||||| |||||||| ||| || | |||||| | ||| ||| Sbjct 3009 GAGCAGCTCGTTCTGATGACCTGTGAGGACCAACGGGTATATGCCTATGATGAAGAGGAG 2950 Query 69219 CTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCA 69278 |||||| |||||||| | || | ||| | || || || ||||| | ||||| | Sbjct 2949 CTGCATCTGGTGGCTTCAAGCATGAAGCAGTTAGGTGACGAGGGAATGGAGTATCCAGGC 2890 Query 69279 TTCCAGAGCTATTATCATGGG-GAGGCCTTCAAACATATG 69317 | | | ||||| || ||| |||||||| ||| | ||| Sbjct 2889 TCCACGGTTTATTA-CAGGGGAGAGGCCTTTAAAGACATG 2851 >seq2649 Length=9702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 69155 ATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGA 69214 |||||||||||| | |||||||||| |||||||| ||||||||| |||||| | ||| Sbjct 3463 ATGTGACCAGCTCATTCTGATGACCTTTGAGGACCAACAGGTGTACGCCTATGATGAAGA 3522 Query 69215 CGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCC 69274 ||||| ||| |||||||| | | | ||| | || || ||||| | ||||| Sbjct 3523 GGAGCTTCATCTGGTGGCTTCAAGCTTCAAACAGCTATTCGATGAGGGAATGGAGTATCC 3582 Query 69275 TGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATAT 69316 |||| | | | ||| | | |||||||| || ||| |||| Sbjct 3583 AGCATCCAAAACCTACTGCAAGGGGGAGGCTTTTAAAAATAT 3624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369471168544631