Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq113 419 3e-112 >seq113 Length=1687717 Score = 419 bits (464), Expect = 3e-112 Identities = 1281/1966 (65%), Gaps = 33/1966 (2%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || |||||||||| ||||||||| | || | || || || || || Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| || || || | || | || ||||| || || || || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || | || || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | |||||| | ||| || || || || ||||| ||||| || Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || ||||| || ||||| | || || Sbjct 900116 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 900175 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || || | || || | | || || || || ||||||||||| || Sbjct 900176 TCGTACGTCTCGTAGGTGCCAAGCTCGG---CGGCCAGCTCGCAGCTCGCTTCCAAAGCG 900232 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 | ||||| || || || || |||| | ||||| ||| || || || ||||| Sbjct 900233 GCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAG 900292 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 |||||| | | ||| || |||||||| || |||||||| || || || || || || || Sbjct 900293 GGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTG 900352 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | | | || || | | |||||| | || || || || ||||| |||| || Sbjct 900353 TGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTG 900412 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || | || || |||| |||||| |||| | ||| ||| ||| | | | Sbjct 900413 TTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGC 900472 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||||| | ||| | ||| || ||||| ||||| || ||||| | Sbjct 900473 TCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCC 900532 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | | | || | | || || || || || || || || ||||| ||||||||||| Sbjct 900533 TTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTC 900592 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | || || || | || |||| ||||||||||| Sbjct 900593 TGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCT 900652 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| || | | ||| | | || ||| || | || | || | Sbjct 900653 GTCTGCGACTCGATGATTGCATACCATA-GCTGCTGAGCCTTCACCACACGCTTCACCCT 900711 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| | |||||| || || || |||||| || || ||||| ||||||| Sbjct 900712 CCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAG 900771 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || ||||| || || ||||||| |||||||| | | | || || || ||||| Sbjct 900772 CCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCAT 900831 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||||| ||||| ||||| || || || || || | || || || || || ||||| Sbjct 900832 GAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCC 900891 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || ||||| || || || || || || | | ||| | ||||| || || || || || Sbjct 900892 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACAT 900951 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || |||| ||| || || |||||||| | ||| | || ||||| || || Sbjct 900952 GGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTA 901011 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 ||| ||||||||||| | | ||||| || ||||| || || | || || || || Sbjct 901012 AACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTCCC 901071 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | | ||| || | | | || || ||||| || || || || || || Sbjct 901072 CGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGC 901131 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 |||| | |||| || |||||||| ||||| || ||||||||| ||||| || || || Sbjct 901132 GCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAA 901191 Query 78374 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 ||||| |||| || || || ||||| ||||| || | ||||| || || | Sbjct 901192 GCAGCTGGACAGCTGCGGCCTGTTG----GTTCCAGCATTGAAGAGGGTCGGGGAGGCGT 901247 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | || ||||| || || || || || ||||| || || || ||| ||| || ||| Sbjct 901248 GGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCC 901307 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 || ||||| || || || | ||| | ||| ||||| || | ||| | || || Sbjct 901308 CGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCAT 901367 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | || || | || ||| || |||| ||| || || ||||| ||||||| || || | Sbjct 901368 TGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAAT 901427 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGA 78669 |||| || || || || | || || || ||||||| | |||||| || | | Sbjct 901428 CTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGA-GT 901486 Query 78670 CAGTAGTT-GAAATAAT--AGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAA 78723 || || ||||| || ||||| | | | || || || || | ||||| Sbjct 901487 GTGTCTTTCGAAATCATGGAGGAG-TGG----CGTTTGTTCAGGGGGTTGATGTAGTTGT 901541 Query 78724 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAG 78783 | | || ||||| || || || || | || || || || ||||| | ||||| || | Sbjct 901542 ACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGG 901601 Query 78784 CTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTT 78843 | || | ||| || || || || || || || | | || || |||||| || || | Sbjct 901602 CGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCT 901661 Query 78844 CTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTT 78903 | ||||| | | || | ||| | ||| ||||| || | || | || || || || | Sbjct 901662 CCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCT 901721 Query 78904 TCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-A 78962 |||| | ||| | | | || || |||||||| |||| | ||| || || || |||| Sbjct 901722 TCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGG 901780 Query 78963 ATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || |||||||||||||| || || || || ||| | || ||||| Sbjct 901781 ATGCGAGATGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 901826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694599324436640