Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq113 423 3e-113 seq47 86.0 9e-12 >seq113 Length=1687717 Score = 423 bits (468), Expect = 3e-113 Identities = 1274/1952 (65%), Gaps = 39/1952 (2%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| |||||||||| ||||| || | || | || || || || || Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| || || || | || | || ||||| || || || || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || | || || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | |||||| | ||| || || || || ||||| ||||| || Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| ||||| | ||||| || ||||| || || || | || || Sbjct 900116 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 900175 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| || || || | || || ||||| ||||| || || || | Sbjct 900176 TCGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 900235 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 ||||| || || || || |||| | || || ||| || || | || ||||| ||| Sbjct 900236 TAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 900295 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | ||| || || ||||| || | |||||| || || || || || || || || Sbjct 900296 TAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 900355 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | | | || || | |||||| | ||||| || || || || |||| || || Sbjct 900356 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 900415 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 | || ||||||| |||||| |||| | ||| ||| ||| | | | || Sbjct 900416 AAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTCA 900475 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || ||||| | ||| || ||||| ||||| || ||||| | | Sbjct 900476 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGT---CC 900532 Query 76313 TTGGCATATTGTATT-----ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367 ||| || |||| | || |||||||| || || || |||||||| || || |||| Sbjct 900533 TTGC--TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGAT 900590 Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427 | || ||||||||||| |||| || | || || || | | |||| || || |||| Sbjct 900591 TCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTT 900650 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTAT 76486 | |||| || ||||| || | | ||| | | || ||| || | | | || Sbjct 900651 CTGTCTGCGACTCGATGATTGCATACCATA-GCTGCTGAGCCTTCACCACACGCTTCACC 900709 Query 76487 CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 | | ||| | |||||| || || | |||||| || || ||||| |||||| Sbjct 900710 CTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCC 900769 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 | || || || || ||||||||||| ||||| || | | | || ||||| ||| Sbjct 900770 AGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTC 900829 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || ||||| ||||| ||||| || || || || || | || || | || || ||| Sbjct 900830 ATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTT 900889 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || || ||||| || || || ||||| || | | ||| | ||||| || || || || Sbjct 900890 CCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTAC 900949 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | | || |||| ||| || || |||||||| | ||| | || ||||| || Sbjct 900950 ATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTG 901009 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 ||||| ||||||||||| | | ||||| || ||||| || || | || || | | Sbjct 901010 TAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGC-T 901068 Query 76847 CCACATGCA-CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 || | || | | ||| || | | | ||| || ||||| || ||| ||||| || Sbjct 901069 CCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAG 901128 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 || || | |||| ||||| ||||| ||||| || || |||||| ||||| || || Sbjct 901129 GGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAG 901188 Query 76966 AAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 || ||||| |||| || || || ||||| ||||| || | || || || | Sbjct 901189 GAAGCAGCTGGACAGCTGCGGCCTGTTG----GTTCCAGCATTGAAGAGGGTCGGGGAGG 901244 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 | || |||||||| || || || || || ||||| || || || |||||||| |||||| Sbjct 901245 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCG 901304 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 || ||||| ||||| || | ||| | ||| ||||| || || || | || Sbjct 901305 TCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGC 901364 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 ||| || || | || ||| || |||| ||| || || ||||| ||||||| || | Sbjct 901365 CATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGA 901424 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA 77261 | ||||| || || || || |||| || || ||| || | | |||||| || Sbjct 901425 AATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC-- 901482 Query 77262 TGACAGTG---GTAGAAATAATTGGAGA-TCGTATTCCATTTTTA--GGATTAACATAGT 77315 || ||| | ||||| || | || | | || | || | || || | |||| Sbjct 901483 -GAGTGTGTCTTTCGAAATCATGGAGGAGTGGCGTT---TGTTCAGGGGGTTGATGTAGT 901538 Query 77316 TAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATA 77375 | | | ||| ||||| |||||||| || | || || || || ||||| | || || | Sbjct 901539 TGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGA 901598 Query 77376 CGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTA 77435 |||| || | || || || || || ||||| || | | || ||| ||||| || | Sbjct 901599 CGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGA 901658 Query 77436 TTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAA 77495 | || ||||| | || || | || | ||| || || ||| | || | || || || | Sbjct 901659 TCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGA 901718 Query 77496 CTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTC 77555 | ||||| | || | | || || |||||||| |||| | || || || || ||| Sbjct 901719 CCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTC 901777 Query 77556 T-AATACGAGATGTGATTTTATCAAACATGAC 77586 | || |||||||||||||| || |||||||| Sbjct 901778 TGGATGCGAGATGTGATTTTGTCGAACATGAC 901809 >seq47 Length=2629205 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || |||| ||||||||| || ||||||||||| || || || || | ||| Sbjct 776430 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 776489 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || || || | || |||||| || || | || | ||| | | Sbjct 776490 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 776549 Query 77114 ATATGCTGAGGTCGTTC 77130 || ||||| ||||| || Sbjct 776550 ATGTGCTGGGGTCGCTC 776566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712863097648320