Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq249 159 5e-34 seq100 109 8e-19 seq18 105 1e-17 >seq249 Length=906947 Score = 159 bits (176), Expect = 5e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || |||||||||||||||||||||||| |||||||||||||| || |||| ||||| Sbjct 209281 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAGGCCC 209222 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| |||||||||| ||| | || | || || |||||| |||| | | | Sbjct 209221 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTATGTCTG 209162 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| ||||||| | || | ||| ||||||||||| ||||||| ||||| || || Sbjct 209161 GGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACAGCATCGACGTGCCCGTACAGCTCC 209102 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||||| || || || || |||| Sbjct 209101 TCCAGCACCGCAGCCATTTCTTTCTCCCCTG 209071 Score = 150 bits (166), Expect = 3e-31 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | |||||| || | ||||||||| ||| |||||| ||| | ||| || | Sbjct 207612 CCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATGGGTGGACC 207553 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | |||||| ||||||||||| | ||||||||| | ||||||||| |||||||||||||| Sbjct 207552 TCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGTACATCATC 207493 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || ||||| ||||||||||| ||||| || |||||||| Sbjct 207492 AGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACAGC 207455 >seq100 Length=1875368 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||||||||||| | |||||||| || ||||| ||| ||| |||||| Sbjct 90152 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 90093 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| || || | || || || ||||| ||||||| ||||| || ||||| ||||| Sbjct 90092 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 90033 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | || || || | | |||||| |||| ||||||| ||||||||| | | | | || Sbjct 90032 GTTAGACCCGGCAGGATGCCAAATACCTCCTGACCGATGGCCAGACGCTTTTCTGCTGGG 89973 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446 | | |||||| | ||||||||| |||| || Sbjct 89972 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 89938 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| ||| |||| ||| || || | | ||| || |||||||||| Sbjct 94877 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCATCTTGACGATATTA 94818 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || |||||||||||||||||||| | || |||||||| ||| Sbjct 94817 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 94758 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | |||||||| || || || ||||| |||| ||| | |||||||| || || ||| Sbjct 94757 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 94698 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || || |||||| || || | || | || | ||| | ||||| || || | ||| Sbjct 94697 GCTTTAGGACGGATTTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 94638 Query 8543 CCGTAAAG 8550 || || || Sbjct 94637 CCATAGAG 94630 >seq18 Length=3650284 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||||||||||||||| |||| ||||| || ||| Sbjct 2577349 AAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGTTT 2577408 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||||||||| |||||||| || || |||| ||| | ||||| || || || ||| Sbjct 2577409 CCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATATG 2577468 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | || | || |||| ||| || |||| ||| | |||| || || | ||| Sbjct 2577469 GCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGTGCGTCAATGTCA 2577528 Query 8543 CCGTAAAG 8550 |||| || Sbjct 2577529 TCGTAGAG 2577536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || |||||||| ||||| || ||||||||||| || ||||| || ||| ||||| Sbjct 2579710 TCACCGATAATAATGAGCCGTGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGC 2579769 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | ||| || || | |||||| ||||| ||||| | ||||||||||| Sbjct 2579770 TCCGCTTTCAATATATCACAGACTCGGTTGTGCTCCCTCAGCCACAGCGTGGCGTACATT 2579829 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || ||| | | || ||||||| ||||| | | |||| Sbjct 2579830 CCCAAACCAGGGAGAAGTCCATAGACTTCCTGACCGATAGCCATCTGAGCCTCAGCGGGG 2579889 Query 9412 ACTTCGGGAGGATAGATCAT 9431 ||| ||||||| ||| |||| Sbjct 2579890 ACTCCGGGAGGGTAGCTCAT 2579909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716805103359040