Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1486 105 7e-18
seq28210 91.5 2e-13
>seq1486
Length=661795
Score = 105 bits (116), Expect = 7e-18
Identities = 155/221 (70%), Gaps = 9/221 (4%)
Strand=Plus/Minus
Query 17121 CGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGC 17180
|||| || |||| ||||| | ||||| || || |||| ||||| || | ||| | |
Sbjct 352375 CGTAGGTGGCGTTCTTGTTGCCGATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGACAC 352316
Query 17181 AATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTT---------TCCTGTAGGTCGA 17231
| ||||||||| ||||| || || | | ||| | || | ||||
Sbjct 352315 ACGGCATCGTTTCGATGGCGTTGAACAGGTATTCTCTAAGTGACCGCTCTTTGGGGTCTT 352256
Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291
| || || || |||||||| ||||||||||| || ||||| |||||||||||||| || |
Sbjct 352255 TGATGTAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATTT 352196
Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332
| || ||||| ||||| || || |||| | |||||||||
Sbjct 352195 GGAAGCCGTAGAAGCAGCGCGCCTCCGTCACCTGAACTTCC 352155
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285
|||| | || || || |||||||| ||||||||||| || ||||| |||||||||||||
Sbjct 357686 GGTCTTTGATGTAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGG 357745
Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332
| || || || ||||| ||||| || || |||| | |||||||||
Sbjct 357746 CGATTTGGAAGCCGTAGAAGCAGCGCGCCTCCGTCACCTGAACTTCC 357792
Score = 93.3 bits (102), Expect = 4e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||||||||||||||| || ||||| || || || | ||||||||| || |||||||
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096
| | ||| || || |||||||| || || || ||||| || ||||| ||||
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGG 352483
Score = 93.3 bits (102), Expect = 4e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||||||||||||||| || ||||| || || || | ||||||||| || |||||||
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096
| | ||| || || |||||||| || || || ||||| || ||||| ||||
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGG 357409
>seq28210
Length=470
Score = 91.5 bits (100), Expect = 2e-13
Identities = 210/310 (68%), Gaps = 11/310 (4%)
Strand=Plus/Minus
Query 17236 ATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAA 17295
||| ||||| || || ||| || |||| || || ||||||||||| || |||||
Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382
Query 17296 TCCGTA--AAAGCATCGGGCTTCCGC-TATTTGAACTTCCACGTAGAATCGT-TCCGCTA 17351
|| || ||| | ||| |||||| |||| || || || || || | || || |
Sbjct 381 CCCATAGAAAAACTTCG--CTTCCGAATATTGGACCT--CATTTACAAAATTCTCAGCCA 326
Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411
||||||||||||||| || || || |||||||||||||| |||||||| |||||||
Sbjct 325 AATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAAT 266
Query 17412 ATTTTTCGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468
| |||||| | || | ||| ||| | ||||| | || || | |
Sbjct 265 AGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCT 206
Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528
|||| | |||||||||| |||| | ||||||||| | ||| | ||| | || ||
Sbjct 205 CTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTT 146
Query 17529 GTATGGGGAA 17538
| ||||| ||
Sbjct 145 GAATGGGAAA 136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517303796226360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |