Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1486 105 7e-18 seq28210 91.5 2e-13 >seq1486 Length=661795 Score = 105 bits (116), Expect = 7e-18 Identities = 155/221 (70%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 17121 CGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGC 17180 |||| || |||| ||||| | ||||| || || |||| ||||| || | ||| | | Sbjct 352375 CGTAGGTGGCGTTCTTGTTGCCGATCCAGTTGAGCGCCCAGTCGGCCTTCTTCTTGACAC 352316 Query 17181 AATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTT---------TCCTGTAGGTCGA 17231 | ||||||||| ||||| || || | | ||| | || | |||| Sbjct 352315 ACGGCATCGTTTCGATGGCGTTGAACAGGTATTCTCTAAGTGACCGCTCTTTGGGGTCTT 352256 Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 | || || || |||||||| ||||||||||| || ||||| |||||||||||||| || | Sbjct 352255 TGATGTAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATTT 352196 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || ||||| ||||| || || |||| | ||||||||| Sbjct 352195 GGAAGCCGTAGAAGCAGCGCGCCTCCGTCACCTGAACTTCC 352155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || |||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 357686 GGTCTTTGATGTAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGG 357745 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || || || ||||| ||||| || || |||| | ||||||||| Sbjct 357746 CGATTTGGAAGCCGTAGAAGCAGCGCGCCTCCGTCACCTGAACTTCC 357792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || || | ||||||||| || ||||||| Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | | ||| || || |||||||| || || || ||||| || ||||| |||| Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGG 352483 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || || | ||||||||| || ||||||| Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | | ||| || || |||||||| || || || ||||| || ||||| |||| Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGG 357409 >seq28210 Length=470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 210/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Minus Query 17236 ATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAA 17295 ||| ||||| || || ||| || |||| || || ||||||||||| || ||||| Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382 Query 17296 TCCGTA--AAAGCATCGGGCTTCCGC-TATTTGAACTTCCACGTAGAATCGT-TCCGCTA 17351 || || ||| | ||| |||||| |||| || || || || || | || || | Sbjct 381 CCCATAGAAAAACTTCG--CTTCCGAATATTGGACCT--CATTTACAAAATTCTCAGCCA 326 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 ||||||||||||||| || || || |||||||||||||| |||||||| ||||||| Sbjct 325 AATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAAT 266 Query 17412 ATTTTTCGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468 | |||||| | || | ||| ||| | ||||| | || || | | Sbjct 265 AGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCT 206 Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 |||| | |||||||||| |||| | ||||||||| | ||| | ||| | || || Sbjct 205 CTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTT 146 Query 17529 GTATGGGGAA 17538 | ||||| || Sbjct 145 GAATGGGAAA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517303796226360