Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq28210 105 7e-18 >seq28210 Length=470 Score = 105 bits (116), Expect = 7e-18 Identities = 216/318 (68%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||| ||||||||||| | || ||||||| || |||||||| || || ||||| Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGT-TCCGCCAGGT 16592 |||||||| | || |||| ||| || || | || || | || |||| | Sbjct 381 CCCATAGAAAAACTTCGCTTCCGAATATTGGACCTC-ATTTACAAAATTCTCAGCCAAAT 323 Query 16593 TCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATT 16652 | || |||||||| || ||| |||||| ||||||||||| || ||||| |||||||| Sbjct 322 TTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGC 263 Query 16653 TTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTT 16709 ||||||| | || | | |||||| | ||||| | || || | |||| Sbjct 262 GTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTT 203 Query 16710 CTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTA 16769 ||| ||||||||| | |||| | ||||||||| | ||| | ||| | || ||| | Sbjct 202 CTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGAA 143 Query 16770 TGGGAAATACGACGTATC 16787 ||||||| | ||| ||| Sbjct 142 TGGGAAAAATTACGAATC 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511175460799640