Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq28210 105 7e-18
>seq28210
Length=470
Score = 105 bits (116), Expect = 7e-18
Identities = 216/318 (68%), Gaps = 5/318 (2%)
Strand=Plus/Minus
Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533
||| ||||||||||| | || ||||||| || |||||||| || || |||||
Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382
Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGT-TCCGCCAGGT 16592
|||||||| | || |||| ||| || || | || || | || |||| |
Sbjct 381 CCCATAGAAAAACTTCGCTTCCGAATATTGGACCTC-ATTTACAAAATTCTCAGCCAAAT 323
Query 16593 TCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATT 16652
| || |||||||| || ||| |||||| ||||||||||| || ||||| ||||||||
Sbjct 322 TTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGC 263
Query 16653 TTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTT 16709
||||||| | || | | |||||| | ||||| | || || | ||||
Sbjct 262 GTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTT 203
Query 16710 CTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTA 16769
||| ||||||||| | |||| | ||||||||| | ||| | ||| | || ||| |
Sbjct 202 CTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGAA 143
Query 16770 TGGGAAATACGACGTATC 16787
||||||| | ||| |||
Sbjct 142 TGGGAAAAATTACGAATC 125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511175460799640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |