Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq696 89.7 4e-13 >seq696 Length=192186 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT-TGCAAACGGTGAATTATC 19030 |||| || ||||| || || | | || ||||| ||||| ||| | ||| || | || Sbjct 54346 ATGGCGCTGCCTCCCTGCCATGCCCTGTGCCAGTTCTACGTGTGCGA-CGGCGAGCTGTC 54288 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 |||||| | |||||| | || || ||||||||||| || || || |||||||| || | Sbjct 54287 CTGCCAGCTGTACCAGCGCTCTGGCGATATGGGCCTGGGCGTGCCTTTCAACATCGCCAG 54228 Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAAT 19150 || || || || || ||||| | ||||| | || ||||| | | || || || | Sbjct 54227 CTACGCCCTCCTCACGTACATGATCGCGCACATCACGGGACTCCAGCCGGGCGACTTCGT 54168 Query 19151 TCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208 || || |||| || || || | ||| | || || || || | || ||||||||| Sbjct 54167 CCACACGTTGGGCGACGCGCACGTCTACCTCAACCACATGGAACCGTTGAAAGTGCAG 54110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399322013068965