Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 356 3e-93
seq28210 134 2e-26
seq10769 98.7 1e-15
seq354 93.3 5e-14
seq1486 87.8 2e-12
seq6295 86.0 7e-12
>seq1148
Length=2189075
Score = 356 bits (394), Expect = 3e-93
Identities = 1065/1636 (65%), Gaps = 13/1636 (1%)
Strand=Plus/Plus
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
|| || ||||| || || | || | || || || || || ||||| | || ||||
Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
|| | || |||||||||| |||| || ||| || || |||| ||||| || |
Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453
Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569
| |||||| || ||||| || | || || || || || || || || | || | |
Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513
Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629
| || ||| | || || || | || || || || || || || || | ||||||
Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573
Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA-- 53687
|| |||| || |||||| || || ||| || || || || | ||
Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633
Query 53688 -TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 53744
| || ||||||| | || | || || || || || ||||| ||||| | | ||
Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693
Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804
| |||| | ||||| ||||| || || || ||||||||||| || | || || |
Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751
Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864
| || ||||| || || |||||||| || || ||| | ||||| || || || |||
Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811
Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924
| || || || || || | ||| || | || || | | ||| | |
Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGA--CCCGGCC 533869
Query 53925 CTCTTTCGTATAG--TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982
||| ||| |||| ||| ||||| |||||||| || ||||| | ||||| ||
Sbjct 533870 CTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCC 533929
Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042
||| || |||| |||||||| | |||||| || || || || | ||||| ||
Sbjct 533930 AGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAA 533989
Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102
||||| || ||||| ||| | | || || || | || | || ||||| || |||||
Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049
Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162
||||| || || || ||||| | | || ||| | |||||||| |||| ||| ||||
Sbjct 534050 GTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGC 534109
Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222
| | || ||||| ||||| |||||||| || | ||| | || ||||| || || ||
Sbjct 534110 GAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGAC 534169
Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282
| || ||| || | | || ||||| |||||||| |||| ||| ||||| ||| |
Sbjct 534170 ACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGT 534229
Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342
|| ||| || || | | | || || || |||||| ||| ||||| | || ||
Sbjct 534230 GGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACA 534289
Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402
| || | ||| || |||||||| || || || || ||| ||||| || || || ||
Sbjct 534290 CTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349
Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462
||| |||| || | || | || || || || || | || || || |||||||| ||
Sbjct 534350 GCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAA 534409
Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522
|||| | || ||||| || ||||||||||| || || | || | | || ||
Sbjct 534410 CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGAT 534469
Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582
|| || || || ||||| | ||||||||| || | || | | |||| ||| || ||
Sbjct 534470 GCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTT 534529
Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642
|||| ||||| |||| || || || ||||| | ||||| || ||||| || ||
Sbjct 534530 GAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTC 534589
Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702
||| || || | ||||| || ||||| | | || | |||| || | ||
Sbjct 534590 GTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCT 534648
Query 54703 T-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCA 54761
| || || || || ||||| | ||| || ||||| ||||| || | |||| ||
Sbjct 534649 TGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCA 534708
Query 54762 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGG 54821
| || || || || | || || || || ||||| || || || || || || | || |
Sbjct 534709 TGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTG 534768
Query 54822 CTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAG 54881
| | |||||||| || || || | || || ||||| || || ||||| | ||| |
Sbjct 534769 CCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCG 534828
Query 54882 TGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941
| |||| || ||||| || || ||| | || | || ||||| |||||||| | || |
Sbjct 534829 TATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCT 534888
Query 54942 TAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGA 55001
| || || | || | ||| | |||||| || | || || || || ||||
Sbjct 534889 GAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGA 534948
Query 55002 TTTTATCAAACATGAC 55017
||||||| ||||||||
Sbjct 534949 TTTTATCGAACATGAC 534964
>seq28210
Length=470
Score = 134 bits (148), Expect = 2e-26
Identities = 260/377 (69%), Gaps = 15/377 (4%)
Strand=Plus/Minus
Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440
|| ||||| || ||| || ||||| |||||||||| ||| ||| |||| ||||||
Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405
Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC- 24499
||||| || || |||||||| || |||||| | | || || | | || || ||
Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345
Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559
| |||||||| || || |||||||| ||||| || || ||| || || ||||||||
Sbjct 344 TTTACAAAAT-TCTCAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286
Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCATTGAT 24616
||| | ||| ||||| ||||| |||||| | || | | |||||||| |
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226
Query 24617 ATCTT----TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672
||||| ||| | |||| ||||| | |||||||| | ||||| |||||||
Sbjct 225 ATCTTGGTGTAGGTCTATC----TCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTAT 170
Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT-TTGGATTTTTT 24731
|| | ||| | || || | |||||| |||||||| || |||| | || | ||| ||
Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110
Query 24732 GCAAGGATTGGTTCCAT 24748
|||| || || |||||
Sbjct 109 GCAA-AATAGGCTCCAT 94
>seq10769
Length=223
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 24170 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 24229
||| || ||||| ||||| || | ||||||||| | ||||| ||||| | ||| || ||
Sbjct 215 AATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAAT 156
Query 24230 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289
|| ||| | || ||||||||||| || || || || ||||| ||||| || | |||
Sbjct 155 AGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTC 96
Query 24290 TCCATAAC-CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 24348
|| ||| || | | | |||||||||| |||||||| |||||||| || | |
Sbjct 95 AGCAAAACTTGGTGAT----TCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTTGATAG 40
Query 24349 AAGGCATTGTCTCTATAGCATTAAAGAG-ATAGtttttt 24386
|| | | || || || |||||||| ||| | ||||
Sbjct 39 CCGGAAAATTTTCAATGGCCTTAAAGAGTATATTCTTTT 1
>seq354
Length=3526367
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| |||||||| || || | ||||| || ||||| ||||| ||||| || | || | |
Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||| || | || |||||||| || || || ||||| || |||| | |||
Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170
Query 53270 CTATTTCTAAGACCGT 53285
|| ||||||| ||||
Sbjct 777171 CTGTTTCTAACGCCGT 777186
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| || ||||| ||||| || || || ||||| || | || || || |
Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
|||| || || ||||||| ||||| || || || | || || | |||||||||||
Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
|| || || |||| || ||||| | || ||||| ||||||||
Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343
>seq1486
Length=661795
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||||||||| || || | |||||||| || |||||||||||||| ||||| || || |
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| || |||| || || || || || ||||| || || || || || || || |
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474
Query 24277 C 24277
|
Sbjct 352473 C 352473
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||||||||| || || | |||||||| || |||||||||||||| ||||| || || |
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| || |||| || || || || || ||||| || || || || || || || |
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418
Query 24277 C 24277
|
Sbjct 357419 C 357419
>seq6295
Length=211
Score = 86.0 bits (94), Expect = 7e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577
|||||| | |||||||||||||| || || | ||| || || ||||| | | |||||||
Sbjct 19 AATAAATGTATCTGCTAATCCTTGTACGCCTAAACCAATTGGCCTATGGCGCATATTAGA 78
Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632
| |||| |||||| | ||||||||| || ||||||| | ||||| | ||||
Sbjct 79 GTTTTCTGCTTCTTTTACAGGATAATAGTTCCTATCTATTACCTTATTCAAGTTT 133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593444205846960
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