Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1148 356 3e-93 seq28210 134 2e-26 seq10769 98.7 1e-15 seq354 93.3 5e-14 seq1486 87.8 2e-12 seq6295 86.0 7e-12 >seq1148 Length=2189075 Score = 356 bits (394), Expect = 3e-93 Identities = 1065/1636 (65%), Gaps = 13/1636 (1%) Strand=Plus/Plus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || ||||| || || | || | || || || || || ||||| | || |||| Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || | || |||||||||| |||| || ||| || || |||| ||||| || | Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | |||||| || ||||| || | || || || || || || || || | || | | Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 | || ||| | || || || | || || || || || || || || | |||||| Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA-- 53687 || |||| || |||||| || || ||| || || || || | || Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633 Query 53688 -TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 53744 | || ||||||| | || | || || || || || ||||| ||||| | | || Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | |||| | ||||| ||||| || || || ||||||||||| || | || || | Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | || ||||| || || |||||||| || || ||| | ||||| || || || ||| Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924 | || || || || || | ||| || | || || | | ||| | | Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGA--CCCGGCC 533869 Query 53925 CTCTTTCGTATAG--TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 ||| ||| |||| ||| ||||| |||||||| || ||||| | ||||| || Sbjct 533870 CTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCC 533929 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| || |||| |||||||| | |||||| || || || || | ||||| || Sbjct 533930 AGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAA 533989 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||| ||| | | || || || | || | || ||||| || ||||| Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 ||||| || || || ||||| | | || ||| | |||||||| |||| ||| |||| Sbjct 534050 GTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGC 534109 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || ||||| ||||| |||||||| || | ||| | || ||||| || || || Sbjct 534110 GAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGAC 534169 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | || ||| || | | || ||||| |||||||| |||| ||| ||||| ||| | Sbjct 534170 ACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGT 534229 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || ||| || || | | | || || || |||||| ||| ||||| | || || Sbjct 534230 GGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACA 534289 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | || | ||| || |||||||| || || || || ||| ||||| || || || || Sbjct 534290 CTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 ||| |||| || | || | || || || || || | || || || |||||||| || Sbjct 534350 GCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAA 534409 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 |||| | || ||||| || ||||||||||| || || | || | | || || Sbjct 534410 CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGAT 534469 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || ||||| | ||||||||| || | || | | |||| ||| || || Sbjct 534470 GCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTT 534529 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 |||| ||||| |||| || || || ||||| | ||||| || ||||| || || Sbjct 534530 GAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTC 534589 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 ||| || || | ||||| || ||||| | | || | |||| || | || Sbjct 534590 GTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCT 534648 Query 54703 T-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCA 54761 | || || || || ||||| | ||| || ||||| ||||| || | |||| || Sbjct 534649 TGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCA 534708 Query 54762 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGG 54821 | || || || || | || || || || ||||| || || || || || || | || | Sbjct 534709 TGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTG 534768 Query 54822 CTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAG 54881 | | |||||||| || || || | || || ||||| || || ||||| | ||| | Sbjct 534769 CCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCG 534828 Query 54882 TGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 | |||| || ||||| || || ||| | || | || ||||| |||||||| | || | Sbjct 534829 TATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCT 534888 Query 54942 TAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGA 55001 | || || | || | ||| | |||||| || | || || || || |||| Sbjct 534889 GAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGA 534948 Query 55002 TTTTATCAAACATGAC 55017 ||||||| |||||||| Sbjct 534949 TTTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 134 bits (148), Expect = 2e-26 Identities = 260/377 (69%), Gaps = 15/377 (4%) Strand=Plus/Minus Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 || ||||| || ||| || ||||| |||||||||| ||| ||| |||| |||||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC- 24499 ||||| || || |||||||| || |||||| | | || || | | || || || Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | |||||||| || || |||||||| ||||| || || ||| || || |||||||| Sbjct 344 TTTACAAAAT-TCTCAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCATTGAT 24616 ||| | ||| ||||| ||||| |||||| | || | | |||||||| | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 24617 ATCTT----TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 ||||| ||| | |||| ||||| | |||||||| | ||||| ||||||| Sbjct 225 ATCTTGGTGTAGGTCTATC----TCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTAT 170 Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT-TTGGATTTTTT 24731 || | ||| | || || | |||||| |||||||| || |||| | || | ||| || Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110 Query 24732 GCAAGGATTGGTTCCAT 24748 |||| || || ||||| Sbjct 109 GCAA-AATAGGCTCCAT 94 >seq10769 Length=223 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 24170 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 24229 ||| || ||||| ||||| || | ||||||||| | ||||| ||||| | ||| || || Sbjct 215 AATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAAT 156 Query 24230 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 || ||| | || ||||||||||| || || || || ||||| ||||| || | ||| Sbjct 155 AGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTC 96 Query 24290 TCCATAAC-CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 24348 || ||| || | | | |||||||||| |||||||| |||||||| || | | Sbjct 95 AGCAAAACTTGGTGAT----TCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTTGATAG 40 Query 24349 AAGGCATTGTCTCTATAGCATTAAAGAG-ATAGtttttt 24386 || | | || || || |||||||| ||| | |||| Sbjct 39 CCGGAAAATTTTCAATGGCCTTAAAGAGTATATTCTTTT 1 >seq354 Length=3526367 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || |||||||| || || | ||||| || ||||| ||||| ||||| || | || | | Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| || | || |||||||| || || || ||||| || |||| | ||| Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170 Query 53270 CTATTTCTAAGACCGT 53285 || ||||||| |||| Sbjct 777171 CTGTTTCTAACGCCGT 777186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||| ||||| || || || ||||| || | || || || | Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||| || || ||||||| ||||| || || || | || || | ||||||||||| Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || |||| || ||||| | || ||||| |||||||| Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343 >seq1486 Length=661795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| || || || || || ||||| || || || || || || || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 24277 C 24277 | Sbjct 352473 C 352473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| || || || || || ||||| || || || || || || || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 24277 C 24277 | Sbjct 357419 C 357419 >seq6295 Length=211 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 53518 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 |||||| | |||||||||||||| || || | ||| || || ||||| | | ||||||| Sbjct 19 AATAAATGTATCTGCTAATCCTTGTACGCCTAAACCAATTGGCCTATGGCGCATATTAGA 78 Query 53578 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 | |||| |||||| | ||||||||| || ||||||| | ||||| | |||| Sbjct 79 GTTTTCTGCTTCTTTTACAGGATAATAGTTCCTATCTATTACCTTATTCAAGTTT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593444205846960