Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq940 105 8e-18 >seq940 Length=7378152 Score = 105 bits (116), Expect = 8e-18 Identities = 177/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| ||| || || | ||| || ||| |||| || || Sbjct 5002735 GAACTTCTCAAAGTTCCAGGACACATCATTCCTGCAGACGGGACTCCAGATGATATACTT 5002676 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||||| ||| || | | | ||||||| | || ||| ||| |||||| ||||| Sbjct 5002675 GGGGTCAGTCATCAGGGAGGTGGGGTCGTCGATGGGAAACGGGAGGCTCTCTCGCAGGAA 5002616 Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 | ||| || || || || |||||| | || || || ||| || |||||| || Sbjct 5002615 TGTGAACAGTGGGTGGGCATCCTTGC--CATTCACATCTACCTTTTCCAAGAGCTGGAAC 5002558 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 || |||||| |||| ||||| || ||||||||||||| || || | ||| || |||| Sbjct 5002557 TTGGGCTCGTAGCCATTCCCGGGTCGGACGTGCTTCAATGACGGGAGGATTTCATTATTC 5002498 Query 83381 TGGGCGTTTTCCTG 83394 | ||| ||||| Sbjct 5002497 CTGTTGTTCTCCTG 5002484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608512362525080