Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1473 109 5e-19 >seq1473 Length=2736273 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || | || |||||||| || || Sbjct 2587698 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCA 2587639 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | ||||||||||| ||| | |||||||||||| ||| || ||| Sbjct 2587638 GCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTG 2587579 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| |||| |||||| || | ||| ||||||||||| || | || Sbjct 2587578 ACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 2587519 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || ||||| || Sbjct 2587518 TTCACAAAGATCTGCATGTT 2587499 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || || | ||| | ||||| ||||| || ||||| ||||| | Sbjct 1454056 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 1453997 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || ||||| |||||||| ||| | || | ||||| ||||| || Sbjct 1453996 AGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453937 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || ||||| | | ||||| |||| ||| | Sbjct 1453936 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACT 1453877 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | ||||| |||||||| ||||| Sbjct 1453876 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||| | |||||||| || || ||||| ||||| | Sbjct 1452462 TTCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 1452403 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || |||| ||||||||| ||| | || | || ||||| || | Sbjct 1452402 AGAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAG 1452343 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||| || ||| || | | ||||| |||| | || Sbjct 1452342 GAATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAA 1452283 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| ||||||||||| |||| || || ||||| ||||||||||| Sbjct 1452282 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || | |||| |||||||| || || Sbjct 2590205 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCA 2590264 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||| || | |||||||||||| ||| || ||| Sbjct 2590265 GCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTG 2590324 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| |||| |||||| || | ||| ||||||||||| || | || Sbjct 2590325 ACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 2590384 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || ||||| || Sbjct 2590385 TTCACAAAGATCTGCATGTT 2590404 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||| | |||||||||||||| ||||| ||||| | | Sbjct 2588184 CCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGAC 2588125 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || || || ||||| ||| | || | ||||||||||| ||| Sbjct 2588124 AGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2588065 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || ||| || | | | || |||| ||| || Sbjct 2588064 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACC 2588005 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | ||| || || || || ||||| Sbjct 2588004 TCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || || | ||| | ||||||||||| || ||||| ||||| | Sbjct 1453828 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453769 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||| |||||||| ||| | || | ||||| ||||| || Sbjct 1453768 AGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453709 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| || || ||||| | | |||||||||| ||| Sbjct 1453708 ATGCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACC 1453649 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || | |||||||| |||| || || |||||||||||||| Sbjct 1453648 TCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| || || | ||||||||| | || ||||| | ||||| Sbjct 1454482 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCG 1454423 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||| ||| | |||||||||||| ||| | || Sbjct 1454422 GCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTG 1454363 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||||| |||| | ||| || | ||| | || ||||||||| | || Sbjct 1454362 ACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTC 1454303 Query 21159 TTGACAAATATTTGCAT 21175 || |||||||| ||||| Sbjct 1454302 TTCACAAATATCTGCAT 1454286 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || || | ||| | |||||||| || || ||||| ||||| | Sbjct 1452916 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1452857 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || ||||| |||||||| ||| | || | ||||||||||| || Sbjct 1452856 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGA 1452797 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| || || || || | | ||||| |||| | ||| Sbjct 1452796 ATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACC 1452737 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| ||||| || | || || ||||| || ||||| Sbjct 1452736 TCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | || | ||| | ||||||||||| |||||||| ||||| | Sbjct 1453372 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1453313 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || ||||| |||||||| ||| | || | ||||| ||||| || Sbjct 1453312 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453253 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| ||| || ||||| | | || || |||| ||| Sbjct 1453252 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1453193 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 1453192 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | || | ||| | ||||||||||| || ||||| ||||| | Sbjct 1453600 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453541 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || || |||||||| ||| | || | ||||| ||||| || Sbjct 1453540 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453481 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| || || ||||| | | ||||| |||| | ||| Sbjct 1453480 ATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACC 1453421 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || || ||||| || | || || |||||||||||||| Sbjct 1453420 TCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| |||||||| || ||||| ||||| | || || || | || Sbjct 2587941 AGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATCT 2587882 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || ||||| ||| | || | ||||||||||| ||| | |||||||||||| Sbjct 2587881 TCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 2587822 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| || |||| ||| || || | ||| |||||| Sbjct 2587821 TGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTC 2587762 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || || ||||| Sbjct 2587761 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422066847342932