Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 118 2e-21
>seq1473
Length=2736273
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| | ||| | ||||| || || ||||| || || || | ||| ||||||| |||
Sbjct 1454742 ATGCAGTTGTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAAGCCAAT 1454801
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||| || ||| | || ||||| || || || |||||||| || ||||| |||
Sbjct 1454802 GATACAGTTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCTGACCAA 1454861
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| ||||| || |||| ||| | || || | ||||| ||
Sbjct 1454862 CAAAGGCTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTCTCTGATTACAAC 1454921
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || | || | ||| | || | ||| |||||||||| ||
Sbjct 1454922 ATCCAAAAGGAGGCTACGCTTCATCTCGTCCTGCGTCTACGAGGTGGCAT 1454971
Score = 116 bits (128), Expect = 6e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| || || || || || || ||| | ||| |||| | | |
Sbjct 1454970 ATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGT 1455029
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| ||||| || || || ||||| || || |||||||||
Sbjct 1455030 GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 1455089
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| || ||||||||||| ||| | || ||| | ||||| ||
Sbjct 1455090 CAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAAC 1455149
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|| || ||||||||||| | ||| | || | ||| | ||||||||
Sbjct 1455150 ATCCAGAAAGAATCAACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1455196
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | ||||| || || ||||||||||| || ||||| |||| | | |
Sbjct 1453374 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGT 1453433
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || | ||| | || |||||||| || |||||||| || || ||||| |||
Sbjct 1453434 GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453493
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| || |||||| | || ||| | || || | || || ||
Sbjct 1453494 CAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAAC 1453553
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | ||| | || || ||| | |||||||| ||
Sbjct 1453554 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCAT 1453603
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | ||||| ||||| ||||| ||| | ||| | ||| |||| | | |
Sbjct 1453602 ATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1453661
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || || | || |||||||| || |||||||| || || ||||| |||
Sbjct 1453662 GATACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453721
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| || |||||| | || ||| | || || | || || ||
Sbjct 1453722 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAAC 1453781
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | ||| | || | ||| | |||||||| ||
Sbjct 1453782 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCAT 1453831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755103041513600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |