Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1148 187 2e-42 seq1473 109 5e-19 seq782 82.4 7e-11 >seq1148 Length=2189075 Score = 187 bits (206), Expect = 2e-42 Identities = 498/748 (67%), Gaps = 36/748 (5%) Strand=Plus/Plus Query 133222 GGTTGAC-CACTTGAAACTCGCCGGCGAGAAC---GCGTCTGAGATATACATTCGACGTG 133277 ||||||| |||| ||| |||||||| ||| || |||| || |||| || ||| Sbjct 533086 GGTTGACGCACTGGAA-CTCGCCGGAGAGCACCCTGCGTGTG---TATATGTTGCTGGTG 533141 Query 133278 AACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTAC 133337 ||| || | || ||||||||||| || |||||||| || | || ||||||||| | Sbjct 533142 TACGCCTCAATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGC 533201 Query 133338 GCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAG 133397 |||| || || |||||| || |||| |||| || || || | | ||||| Sbjct 533202 GCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAG 533261 Query 133398 TCCCACAGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAA 133456 |||||||| || ||||| ||| | | | ||| | | || | Sbjct 533262 TCCCACAGCGGCGTGGGAAT--------CCGCTGCC--------ACATGTCATACTGGAG 533305 Query 133457 AATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAG 133516 || ||| |||| || ||| | ||| ||||| || ||||| |||| |||||| Sbjct 533306 GATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAG 533365 Query 133517 CTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGA 133575 ||||||||| ||||||| ||||| |||| | || || ||| |||||| |||| | Sbjct 533366 CTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATA-TTGA-GT 533423 Query 133576 ACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACC 133633 | || || ||| ||| || ||| | || || | |||| || |||||||||| || Sbjct 533424 AGTTGCGCCTCGGGGCTCTCAAAGG-GCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCC 533482 Query 133634 CTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGG 133693 ||| | ||||| ||| ||||| || || | ||| | || || ||| | | || Sbjct 533483 CTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGCCTCAGGCACCGG 533542 Query 133694 ATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTT 133753 |||| ||||| |||||||||| ||||||| || |||||| | ||| || | Sbjct 533543 GTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGGCCGC 533602 Query 133754 CAGCAAAACATAGTCAAATGTCTTGGCG-TCGACGTCGACGCACTTGTTGACGGCAATAC 133812 |||| |||| |||| ||| ||| | |||| || |||||| || | Sbjct 533603 CAGCTTCTTGAAGTCGTATGT----GCGCTCGGGGGTGACGTACATGTTGAGCGCCACGG 533658 Query 133813 TGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGA 133872 |||||| || || |||||| ||||| || | | || | ||||||||| | ||| | Sbjct 533659 AGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACA 533718 Query 133873 GGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCT 133932 |||||||||| ||||||||||||| || | || ||||| | |||||| ||||| Sbjct 533719 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCT 533778 Query 133933 TGTATAGCATGTACGGCCCGCCGGTTTC 133960 |||| |||||||||||| ||| || || Sbjct 533779 TGTAGAGCATGTACGGCGTGCCCGTCTC 533806 >seq1473 Length=2736273 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||||||||| |||||||| || | ||||| ||| || | || || ||| Sbjct 1454254 GTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTGCGTCCATCTTCTAATTGCTTACCA 1454195 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| || || ||||| |||||||| ||||| || Sbjct 1454194 GCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTC 1454135 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || || ||||| ||| ||||||||| | ||| | || ||||| || || || Sbjct 1454134 ACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 1454075 Query 118722 TTTACAAAAATCTGCATG 118739 |||||||| ||||||||| Sbjct 1454074 TTTACAAAGATCTGCATG 1454057 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || ||||||||||| ||| | ||||| ||| || | Sbjct 1453353 CAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 1453294 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| ||||| | || | | ||| || || ||||| ||||| || ||||| | Sbjct 1453293 GTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGA 1453234 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | || || ||||| | | ||| ||||| | || || || |||| Sbjct 1453233 TTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGACGGTCTTGC 1453174 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || || |||||||| ||||||||| Sbjct 1453173 CAGTTAGGGTCTTTACAAAGATCTGCATG 1453145 >seq782 Length=5188642 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| |||||||||||||| || |||||| |||||| | |||||| |||||| ||| Sbjct 2940387 CTTTCTGAATGTTGTAATCAGACAGAGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAGA 2940446 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | |||||||||||||| || || || || Sbjct 2940447 TCAGACGCTGCTGATCAGGGGGGATTCC 2940474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433632776288884