Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1473 100 2e-16 >seq1473 Length=2736273 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || ||| ||| | || |||| |||||| || || ||| Sbjct 2587692 TCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAA 2587633 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| ||| | || |||||||| || ||| ||||| | || Sbjct 2587632 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 2587574 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || || | |||||||| ||||| ||||| || ||||| Sbjct 2587573 CTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 2587514 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2587513 AAAGATCTGCAT 2587502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || |||| | || || | |||||||| || || Sbjct 2587920 TCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAG 2587861 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| ||| | || |||||||| || ||| ||||| | || Sbjct 2587860 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 2587802 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | || ||||| ||||| ||||| || ||||| Sbjct 2587801 CTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCAC 2587742 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 2587741 GAAGATCTGCAT 2587730 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || || |||| |||| |||||| || || || Sbjct 2590211 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAG 2590270 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| || | || |||||||| || ||| ||||| | || Sbjct 2590271 ATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 2590329 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || || | |||||||| ||||| ||||| || ||||| Sbjct 2590330 CTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 2590389 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2590390 AAAGATCTGCAT 2590401 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || || || ||||||||||| ||| Sbjct 2588184 CCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGAC 2588125 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| || || || | || ||||||||| ||| Sbjct 2588124 AGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2588065 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || ||| ||||| | || | || | || | | ||| || Sbjct 2588064 ATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAAC 2588006 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 2588005 CTCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322924830305120