Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 100 2e-16
>seq1473
Length=2736273
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| || ||| ||| | || |||| |||||| || || |||
Sbjct 2587692 TCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAA 2587633
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| | || ||||||||| ||| | || |||||||| || ||| ||||| | ||
Sbjct 2587632 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 2587574
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | | || || || | |||||||| ||||| ||||| || |||||
Sbjct 2587573 CTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 2587514
Query 34378 AAAGATCTGCAT 34389
||||||||||||
Sbjct 2587513 AAAGATCTGCAT 2587502
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| || || |||| | || || | |||||||| || ||
Sbjct 2587920 TCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAG 2587861
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| | || ||||||||| ||| | || |||||||| || ||| ||||| | ||
Sbjct 2587860 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 2587802
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | | ||| || || | || ||||| ||||| ||||| || |||||
Sbjct 2587801 CTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCAC 2587742
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 2587741 GAAGATCTGCAT 2587730
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| || || || |||| |||| |||||| || || ||
Sbjct 2590211 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAG 2590270
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| | || ||||||||| || | || |||||||| || ||| ||||| | ||
Sbjct 2590271 ATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 2590329
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | || | | || || || | |||||||| ||||| ||||| || |||||
Sbjct 2590330 CTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 2590389
Query 34378 AAAGATCTGCAT 34389
||||||||||||
Sbjct 2590390 AAAGATCTGCAT 2590401
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| || || || | || || || || ||||||||||| |||
Sbjct 2588184 CCACCACGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGAC 2588125
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||||| || || || | || ||||||||| |||
Sbjct 2588124 AGTGTGCGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2588065
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||||| || ||| ||||| | || | || | || | | ||| ||
Sbjct 2588064 ATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAAC 2588006
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| ||||| || ||||| |||||||||||
Sbjct 2588005 CTCAAGGGTGATTGTCTTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322924830305120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |