Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq28210 86.0 6e-12
>seq28210
Length=470
Score = 86.0 bits (94), Expect = 6e-12
Identities = 186/276 (67%), Gaps = 7/276 (3%)
Strand=Plus/Minus
Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566
||| ||||| || || | ||| ||||||||||||| |||||||| || |||||
Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382
Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626
||||| || | | ||||| || ||| || ||| ||| | || || || ||
Sbjct 381 CCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAATTCTCAGCCAAATT 322
Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686
|||||| || || ||||| || || |||||||| | || || || || ||||
Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262
Query 16687 ttCGTTATC--TGA---AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741
||||| ||| ||| || || ||| || |||| ||||| || || | ||||
Sbjct 261 TTCGTCATCATTGAGCTTGGTGTT--CCAATCCGAAAGATCTTGGTGTAGGTCTATCTCT 204
Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATAC 16777
||| | ||||||||| |||| || |||||||||
Sbjct 203 TCTGCCGTCCAAAAACAAGCCTCACATTTTTTATAC 168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462295908612200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |