Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq28210 86.0 6e-12 >seq28210 Length=470 Score = 86.0 bits (94), Expect = 6e-12 Identities = 186/276 (67%), Gaps = 7/276 (3%) Strand=Plus/Minus Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 ||| ||||| || || | ||| ||||||||||||| |||||||| || ||||| Sbjct 441 ATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAA 382 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626 ||||| || | | ||||| || ||| || ||| ||| | || || || || Sbjct 381 CCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAATTCTCAGCCAAATT 322 Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686 |||||| || || ||||| || || |||||||| | || || || || |||| Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262 Query 16687 ttCGTTATC--TGA---AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 ||||| ||| ||| || || ||| || |||| ||||| || || | |||| Sbjct 261 TTCGTCATCATTGAGCTTGGTGTT--CCAATCCGAAAGATCTTGGTGTAGGTCTATCTCT 204 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATAC 16777 ||| | ||||||||| |||| || ||||||||| Sbjct 203 TCTGCCGTCCAAAAACAAGCCTCACATTTTTTATAC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462295908612200