Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq797 226 2e-54 >seq797 Length=1598739 Score = 226 bits (250), Expect = 2e-54 Identities = 591/891 (66%), Gaps = 14/891 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || |||||| |||||||| || || ||||| || ||||| |||||| |||| || || Sbjct 995778 CCTCTGAGTGAAGAAGAGAGGGATTTTCCCATCGCATACTCCATGGTGATCCACGAACAG 995837 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| || || || ||| |||| ||| | || ||||||||||||| ||||| || Sbjct 995838 ATCGAAATGTTCGAGCGACTGTTGCGTGCCATTTACACCCCTCAGAACATCTACTGCGTG 995897 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || ||| || ||| | ||||| || || |||||| | |||||| Sbjct 995898 CACGTGGACCGAAAATCTACAGCGAAATTCCATGAGGCCGTGAAAGCCATTGTATCCTGC 995957 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || ||||| ||||| || | || || | ||| ||||| |||| ||| | || Sbjct 995958 TTTGAGAATGTATTCATAGCTGGGAAATTAGAAAATGTGATTTATACCTCATGGGCGCGA 996017 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCATGGAAGTA 107986 ||||| ||||| ||||||| |||| ||| || | |||| || | |||| ||| Sbjct 996018 GTGCAGGCTGATTTGAACTGCATGG-AGAGTTTGTTGGCGTCTCATGTCCGGTGGAGGTA 996076 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | ||||| ||||||||||||||||| || || |||||||| |||||||| | || Sbjct 996077 CCTGCTGAACACATGCGGGACAGACTTTCCGATTAAGACCAACAGAGAGATGGTGCAAGC 996136 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 | || | | || || |||||||| ||||| | || | | ||| | ||| | Sbjct 996137 TTTGAAAGTCCTCAATGGGAAGAACAGCATGGAAACGGAAGCCACCAATGATTACAAGAC 996196 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166 | || ||| |||| | ||| | || |||||| || | | ||| | || ||| Sbjct 996197 GCAACGTTGGCAATATCACTACAACGTCACAGACTCAGTTGTCAGGACCGACGTGAGGAA 996256 Query 108167 GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226 ||| || || || |||||||||| ||||||||||| ||||| ||| | Sbjct 996257 AAGCCCACCTCCCATTAGAAGCCCCATGTTCATGGGGAATGCCTACTTTGTAGCCAGCAG 996316 Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAA 108286 ||||| || | || || | ||| | || || | || |||| || Sbjct 996317 GGCCTTCGTGGAGCACGTGATGCGGGACCGAGAGGTTCAGGTGTTGCTGGAGTGGGAGAA 996376 Query 108287 AGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TG--CTCCGTGGA 108342 |||||||| ||||| ||||| ||| | |||||||| | ||||| || ||||| Sbjct 996377 GGACACCTACAGCCCGGACGAGCACTTGTGGGCCACTTTACAGCGGATGCCCTCCG---- 996432 Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 |||| || || || ||| || ||||| ||| || |||||| ||||||||| Sbjct 996433 TGCCCGGATCAGTGCCTGCAAACGTCAAGTTCGACACGTCGGACATGCAAGCCATCGCCC 996492 Query 108403 GGCTCGTCAAGTGGCAGTA-CCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 | ||||| ||| || | |||| ||||| || | ||||| || |||| Sbjct 996493 GCGCGGTCAAATGGAGCTATTTATCAGGG-GATGTGAGGAAAGGGGCTCCGTATGAGATG 996551 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| || || | || || | || | || || |||| ||||| | | | | Sbjct 996552 TGCAGAGGGGCAAATAGAAGAGCAGTTTGTGTGTATGGAACCGGAGACCT-TCCGTGGCT 996610 Query 108522 CTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 || ||| | || |||||| |||| || |||||||| || | ||||||||| Sbjct 996611 CTTGAGACAGCACCACCTCCTGGCTAATAAGTTTGATCCAATGGTGGATGA 996661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348110152351698