Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq797 226 2e-54
>seq797
Length=1598739
Score = 226 bits (250), Expect = 2e-54
Identities = 591/891 (66%), Gaps = 14/891 (2%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| |||||| |||||||| || || ||||| || ||||| |||||| |||| || ||
Sbjct 995778 CCTCTGAGTGAAGAAGAGAGGGATTTTCCCATCGCATACTCCATGGTGATCCACGAACAG 995837
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| |||| || || || ||| |||| ||| | || ||||||||||||| ||||| ||
Sbjct 995838 ATCGAAATGTTCGAGCGACTGTTGCGTGCCATTTACACCCCTCAGAACATCTACTGCGTG 995897
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || ||| || ||| | ||||| || || |||||| | ||||||
Sbjct 995898 CACGTGGACCGAAAATCTACAGCGAAATTCCATGAGGCCGTGAAAGCCATTGTATCCTGC 995957
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| ||||| ||||| || | || || | ||| ||||| |||| ||| | ||
Sbjct 995958 TTTGAGAATGTATTCATAGCTGGGAAATTAGAAAATGTGATTTATACCTCATGGGCGCGA 996017
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCATGGAAGTA 107986
||||| ||||| ||||||| |||| ||| || | |||| || | |||| |||
Sbjct 996018 GTGCAGGCTGATTTGAACTGCATGG-AGAGTTTGTTGGCGTCTCATGTCCGGTGGAGGTA 996076
Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046
| | ||||| ||||||||||||||||| || || |||||||| |||||||| | ||
Sbjct 996077 CCTGCTGAACACATGCGGGACAGACTTTCCGATTAAGACCAACAGAGAGATGGTGCAAGC 996136
Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106
| || | | || || |||||||| ||||| | || | | ||| | ||| |
Sbjct 996137 TTTGAAAGTCCTCAATGGGAAGAACAGCATGGAAACGGAAGCCACCAATGATTACAAGAC 996196
Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166
| || ||| |||| | ||| | || |||||| || | | ||| | || |||
Sbjct 996197 GCAACGTTGGCAATATCACTACAACGTCACAGACTCAGTTGTCAGGACCGACGTGAGGAA 996256
Query 108167 GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226
||| || || || |||||||||| ||||||||||| ||||| ||| |
Sbjct 996257 AAGCCCACCTCCCATTAGAAGCCCCATGTTCATGGGGAATGCCTACTTTGTAGCCAGCAG 996316
Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAA 108286
||||| || | || || | ||| | || || | || |||| ||
Sbjct 996317 GGCCTTCGTGGAGCACGTGATGCGGGACCGAGAGGTTCAGGTGTTGCTGGAGTGGGAGAA 996376
Query 108287 AGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TG--CTCCGTGGA 108342
|||||||| ||||| ||||| ||| | |||||||| | ||||| || |||||
Sbjct 996377 GGACACCTACAGCCCGGACGAGCACTTGTGGGCCACTTTACAGCGGATGCCCTCCG---- 996432
Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402
|||| || || || ||| || ||||| ||| || |||||| |||||||||
Sbjct 996433 TGCCCGGATCAGTGCCTGCAAACGTCAAGTTCGACACGTCGGACATGCAAGCCATCGCCC 996492
Query 108403 GGCTCGTCAAGTGGCAGTA-CCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461
| ||||| ||| || | |||| ||||| || | ||||| || ||||
Sbjct 996493 GCGCGGTCAAATGGAGCTATTTATCAGGG-GATGTGAGGAAAGGGGCTCCGTATGAGATG 996551
Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521
||| || || | || || | || | || || |||| ||||| | | | |
Sbjct 996552 TGCAGAGGGGCAAATAGAAGAGCAGTTTGTGTGTATGGAACCGGAGACCT-TCCGTGGCT 996610
Query 108522 CTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571
|| ||| | || |||||| |||| || |||||||| || | |||||||||
Sbjct 996611 CTTGAGACAGCACCACCTCCTGGCTAATAAGTTTGATCCAATGGTGGATGA 996661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348110152351698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |