Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1473 134 1e-26 >seq1473 Length=2736273 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || || | || || ||| |||||||||||||||||||||| Sbjct 1453373 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1453314 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||||||||| || || |||||||||| ||||||||| ||||| Sbjct 1453313 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453254 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || |||||| ||||| ||| || | | || |||| | ||||| || Sbjct 1453253 AATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAAC 1453194 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || | |||||||| || || ||||| |||||||| |||||| Sbjct 1453193 CTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1453145 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || || | || || ||| ||||||||| ||||||||||| Sbjct 1453601 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1453542 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || |||||||| || || |||||||||| ||||||||| ||||| Sbjct 1453541 GAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453482 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || |||||| |||||| ||| || |||| |||| | |||| || Sbjct 1453481 AATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAAC 1453422 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || || ||||| || || ||||||||||| ||||||||| Sbjct 1453421 CTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCATG 1453373 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || || | || || ||| ||||||||| ||||||||||| Sbjct 1453145 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1453086 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||||||||| || || |||||||||| ||||||||| ||||| Sbjct 1453085 GAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453026 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || |||||| ||||| ||| || | | || |||| | ||||| || Sbjct 1453025 AATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAAC 1452966 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || | |||||||| || || ||||| |||||||| |||||| Sbjct 1452965 CTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATG 1452917 Score = 122 bits (134), Expect = 7e-23 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || || | || |||| Sbjct 1453809 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGTCCATCTTCCA 1453750 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||||| || || |||||||||| ||||||||| ||||| | || || |||||| || Sbjct 1453749 GTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGAA 1453690 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | || | || | ||||| ||||| | || | ||||||| Sbjct 1453689 TTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGACAGTCTTGC 1453630 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || ||||||||||| ||||||||| Sbjct 1453629 CAGTTAGGGTCTTCACAAATATTTGCATG 1453601 Score = 122 bits (134), Expect = 7e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| | || ||||||||||| || || ||| Sbjct 1454020 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAAT 1453961 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||||||||| ||||| | || ||||||||| ||||| ||| || | Sbjct 1453960 ATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 1453901 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | || |||| | ||||| || || | ||| || |||||||| || || || |||||| Sbjct 1453900 TCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACA 1453841 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 1453840 AATATCTGCATG 1453829 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| ||||||||||| || ||| | || |||| Sbjct 1452897 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 1452838 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||||| || || |||||||||| ||| ||||| ||||| | || || |||||| || Sbjct 1452837 GTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGAA 1452778 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | || |||| | |||| ||||| | ||| || || |||| Sbjct 1452777 TTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGTTTTGC 1452718 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || |||||||||||||| |||||| Sbjct 1452717 CAGTGAGGGTCTTCACAAAGATCTGCATG 1452689 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | || | || || ||| ||| ||||| ||||||||||| Sbjct 1452460 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1452401 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| ||||| || || || ||||||| || || || ||||| Sbjct 1452400 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGA 1452341 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||||| ||||| | | || |||| | || || ||| Sbjct 1452340 ATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACC 1452281 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | ||| || |||||||| || || |||||||||||||||||||| || Sbjct 1452280 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || |||| |||| |||| Sbjct 2590194 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCTTCCA 2590253 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||||| ||| ||||| || || | || ||||||||| | Sbjct 2590254 GCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGA 2590313 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 2590314 TTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGC 2590373 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || |||||||||||||| |||||||| Sbjct 2590374 CAGTGAGGGTCTTCACAAAGATCTGCATGTT 2590404 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | || || | || || ||| ||||||||| ||||||||||| Sbjct 1452689 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1452630 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || |||| |||||| || ||||||||||||| ||||||||| || || Sbjct 1452629 GAGGGTGCGGCCATCTTCCAATTGTTTGCCAGCGAATATCAACCTCTGTTGGTCAGGTGG 1452570 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||| | ||||| ||| | | | || | || | ||||| || Sbjct 1452569 AATGCCTTCCTTGTACTGGATTTTGGCCTTCATATTCTCAACAGTATCACTCCCCTCAAC 1452510 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || | |||||||| || || ||||| |||||||| ||||| Sbjct 1452509 CTCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452462 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || ||| | || |||| Sbjct 2587709 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCTTCCA 2587650 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || ||||||| ||| ||||| || || | || ||||||||| | Sbjct 2587649 GCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 2587590 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 2587589 TTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGC 2587530 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || |||||||||||||| |||||||| Sbjct 2587529 CAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||||||| | | || ||| || ||| ||||||||| |||||||| || Sbjct 1454513 GCCACCTCTCAAACGCAGGACATGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 1454454 Query 45169 CAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 || |||| || || |||||| | || ||||| |||||||||| ||| ||||| || Sbjct 1454453 GAGGGTTTGG---TCATCTTCCAGTGGCTTGCCGGCAAATATCAACCTCTGCTGGTCTGG 1454397 Query 45226 AGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTC 45285 || | || |||||||| |||| ||| || | | || |||| | | ||| Sbjct 1454396 GGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTGACATTCTCAACAGTGTCACTAGTCTC 1454337 Query 45286 CACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| | ||| | | |||||| || || ||||||||||| || |||||| Sbjct 1454336 GACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTCTTCACAAATATCTGCATG 1454285 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| |||||| || ||||||||||| |||| ||| | || || | Sbjct 2588165 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATCTTCTA 2588106 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 |||| || || || || ||||||| ||| ||||| || || | || ||||||||| | Sbjct 2588105 GTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGA 2588046 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | | |||| | || ||||| | ||| || ||||||| Sbjct 2588045 TTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATTGTCTTGC 2587986 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || |||||||| ||||| |||||| Sbjct 2587985 CAGTGAGCGTCTTCACGAAGATCTGCATG 2587957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| || | || || ||||| || || || || Sbjct 2587921 CTCCTTCTGGATGTTGTAGTCTGATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAA 2587862 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | || ||||||||| ||||| || || Sbjct 2587861 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATT 2587802 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | || ||||| | ||| || |||||||| || || |||||||| Sbjct 2587801 CTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCAC 2587742 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 2587741 GAAGATCTGCATG 2587729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| |||||||| || ||| ||| | || || | |||||| || || ||| Sbjct 1455160 TCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCTTCTAATTGTTTGCCAGCAAAT 1455101 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| |||||| || || || | || ||||||||| ||||| || || | Sbjct 1455100 ATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATTTTGGCTTTCACATTC 1455041 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | || |||| | |||| ||||| | || || ||||| || || || ||||||||| Sbjct 1455040 TCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTCTTACCAGTAAGGGTCTTCACA 1454981 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 1454980 AAAATCTGCATG 1454969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGT-GCTCTCCTTCTGAATGTTGTAGTCGT 45167 |||||||||||| | | || | || || || ||| ||||| || ||||||||||| Sbjct 1454741 GCCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCT-TCCTTTTGGATGTTGTAGTCAG 1454683 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || |||||| |||| ||||| || || || |||| || ||| || | || | Sbjct 1454682 AGAGGGTGCGATCACATCCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGGCG 1454623 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| ||||| || || | | || | || | ||||| | Sbjct 1454622 GAATACCTTCCTTGTCTTTGATTTTGGCTTTGACATTCTCAACAGTATCACTGCCCTCGA 1454563 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| | || || |||||||| || || || ||||||||||| |||||| Sbjct 1454562 CCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATG 1454513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394895230529917