Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq28210 98.7 1e-15 seq10769 89.7 5e-13 >seq28210 Length=470 Score = 98.7 bits (108), Expect = 1e-15 Identities = 214/317 (68%), Gaps = 5/317 (2%) Strand=Plus/Minus Query 14477 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14536 || |||||||| || | | ||| |||| || || ||||| ||||| || ||||| Sbjct 440 TAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAAC 381 Query 14537 CCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATT 14595 ||||| ||| | | ||||| || |||| ||||| | ||||| | || |||||||| Sbjct 380 CCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCTCAGCCAAATT 322 Query 14596 TTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTG 14655 ||| || || || |||||| || || ||||| ||||| || | || || || || | Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262 Query 14656 CTCTTCATTGCTGAGTT---TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14712 || |||| |||| | | |||||||| | | ||| | || |||| || || Sbjct 261 TTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTTC 202 Query 14713 AACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14772 | |||||||||| ||| || |||||||||| |||| | || | | | || Sbjct 201 TGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGAAT 142 Query 14773 AGGAAAAACTACAAATC 14789 ||||||| ||| |||| Sbjct 141 GGGAAAAATTACGAATC 125 >seq10769 Length=223 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 ||||||||||| || ||||| ||||||||||| |||||||| ||||| || || | | Sbjct 208 TCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATAGAACAA 149 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 || | || |||||||| || ||||| || || ||||| || || | ||||| |||| Sbjct 148 AAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCAGCAAA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482120242106360