Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1473 100 2e-16 >seq1473 Length=2736273 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || |||||||| ||||||||||| | | || | |||||| ||||| Sbjct 1454260 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTGCGTCCATCTTCTAATTGC 1454201 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | || || ||||| ||| | ||||||||| || |||| Sbjct 1454200 TTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTA 1454141 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | |||||||||||| | |||| |||| ||||||| | ||||| || Sbjct 1454140 GCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATGGTCTTGCCAGTG 1454081 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || |||||||| || ||||| Sbjct 1454080 AGGGTCTTTACAAAGATCTGCAT 1454058 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||| | | || | ||||||||| ||| Sbjct 1452436 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAACTGT 1452377 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| | ||||| ||||| || | |||||||| || |||| | Sbjct 1452376 TTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATTT-T 1452318 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | |||||||||||| | || |||| ||||||| | ||||| || Sbjct 1452317 GGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGGTCTTGCCAGT 1452258 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTT 18329 | || || ||||| |||||||||||| Sbjct 1452257 TAGGGTCTTCACAAAGATTTGCATTTTT 1452230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||| | | || | |||||||| |||| Sbjct 1452892 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGTTGT 1452833 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || | || || || || || | |||||| || || ||||| Sbjct 1452832 TTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTC 1452773 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | |||||||||||| | ||| |||| ||||||| ||||||| || Sbjct 1452772 ACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGTTTTGCCAGTG 1452713 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 1452712 AGGGTCTTCACAAAGATCTGCAT 1452690 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| |||| Sbjct 1454032 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGT 1453973 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || | || ||||| || || | ||||||||| || |||| Sbjct 1453972 TTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTG 1453913 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | |||||||||||| ||| ||||| ||||||| | ||||| || Sbjct 1453912 GCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATGGTCTTGCCAGTA 1453853 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| || ||||| Sbjct 1453852 AGGGTTTTCACAAATATCTGCAT 1453830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||| || |||||||| || | | ||| | |||||| |||||| Sbjct 1455172 TGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCTTCTAATTGT 1455113 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| | || | || |||||||| ||| | |||||||| || |||| | Sbjct 1455112 TTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATTT-T 1455054 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | |||| ||||||| | ||| |||| |||||| | || || || Sbjct 1455053 GGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTCTTACCAGT 1454994 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || |||||||| ||||| Sbjct 1454993 AAGGGTCTTCACAAAAATCTGCAT 1454970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379171196597865