Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 100 2e-16
>seq1473
Length=2736273
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || |||||||| ||||||||||| | | || | |||||| |||||
Sbjct 1454260 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGATAAGGTGCGTCCATCTTCTAATTGC 1454201
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| |||| | || || ||||| ||| | ||||||||| || ||||
Sbjct 1454200 TTACCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTA 1454141
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | |||||||||||| | |||| |||| ||||||| | ||||| ||
Sbjct 1454140 GCCTTCACATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATGGTCTTGCCAGTG 1454081
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| || |||||||| || |||||
Sbjct 1454080 AGGGTCTTTACAAAGATCTGCAT 1454058
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || ||||| || ||||||||||| | | || | ||||||||| |||
Sbjct 1452436 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAACTGT 1452377
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| |||| | ||||| ||||| || | |||||||| || |||| |
Sbjct 1452376 TTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATTT-T 1452318
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| || || | |||||||||||| | || |||| ||||||| | ||||| ||
Sbjct 1452317 GGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGATGGTCTTGCCAGT 1452258
Query 18302 CAATGTTTTTACAAAAATTTGCATTTTT 18329
| || || ||||| ||||||||||||
Sbjct 1452257 TAGGGTCTTCACAAAGATTTGCATTTTT 1452230
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || ||||| || ||||||||||| | | || | |||||||| ||||
Sbjct 1452892 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGTTGT 1452833
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| | || | || || || || || | |||||| || || |||||
Sbjct 1452832 TTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTC 1452773
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
|||||| | | |||||||||||| | ||| |||| ||||||| ||||||| ||
Sbjct 1452772 ACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGATGGTTTTGCCAGTG 1452713
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| || || ||||| || |||||
Sbjct 1452712 AGGGTCTTCACAAAGATCTGCAT 1452690
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || ||||| || || ||||||||||| | | || | |||||||| ||||
Sbjct 1454032 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGT 1453973
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| | || | || ||||| || || | ||||||||| || ||||
Sbjct 1453972 TTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTG 1453913
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | |||||||||||| ||| ||||| ||||||| | ||||| ||
Sbjct 1453912 GCCTTCACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATGGTCTTGCCAGTA 1453853
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| ||||| ||||| || |||||
Sbjct 1453852 AGGGTTTTCACAAATATCTGCAT 1453830
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || ||||||||||| || |||||||| || | | ||| | |||||| ||||||
Sbjct 1455172 TGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCTTCTAATTGT 1455113
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| ||| | || | || |||||||| ||| | |||||||| || |||| |
Sbjct 1455112 TTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATTT-T 1455054
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| || || | |||| ||||||| | ||| |||| |||||| | || || ||
Sbjct 1455053 GGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTCTTACCAGT 1454994
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
| || || |||||||| |||||
Sbjct 1454993 AAGGGTCTTCACAAAAATCTGCAT 1454970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379171196597865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |