Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 118 9e-22
>seq1473
Length=2736273
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
||||||||| ||||| || ||| | || |||||||| || ||| | || || || ||
Sbjct 1452689 CATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAG 1452748
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| ||| |||| ||| |||| |||||| | ||||||||| | || ||||||
Sbjct 1452749 TGACACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCA 1452808
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
||| | || |||| ||| |||||||||||||||||| | || | || ||||
Sbjct 1452809 GCAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTACAA 1452868
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
||| ||||||||| |||| || ||| | || | || |||| || ||
Sbjct 1452869 CATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1452916
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
|||||| |||||||| || ||| | || |||||||| || ||| | || || || ||
Sbjct 1453373 CATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAG 1453432
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| ||| |||| ||| |||| |||||| | ||||||||| | || ||||||
Sbjct 1453433 TGACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCA 1453492
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
|| | || |||| ||| ||||||||||| |||||| | || | || ||||
Sbjct 1453493 ACAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAA 1453552
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
||| ||||| ||| |||| || ||| | || || || |||| || ||
Sbjct 1453553 CATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453600
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
||||||||| ||||| || ||| |||| ||||| || | || | || || || |||
Sbjct 1453145 CATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAG 1453204
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| || || | ||| |||| ||||| | ||||||||| | || ||||||
Sbjct 1453205 TGACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 1453264
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
|| | || |||| ||| |||||||||||||||||| | || | ||| ||||
Sbjct 1453265 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAA 1453324
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
||| ||||| ||| |||| || ||| | || || || |||| || ||
Sbjct 1453325 CATTCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453372
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
||||||||||||||| |||||| | || ||||| || || ||| | || || || ||
Sbjct 1453829 CATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAAGTTGAGGGAAG 1453888
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| ||| || | ||| |||| ||||| | || |||||| | || ||||||
Sbjct 1453889 TGACACTGTTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCA 1453948
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
|| | || |||| ||| |||||||||||||||||| | ||| | || ||||
Sbjct 1453949 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACTCTCTCTGACTACAA 1454008
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
||| ||||| || |||| || ||| | || | || |||| || ||
Sbjct 1454009 CATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1454056
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
||||||||| ||||| || ||| |||| ||||| || | || | || || || |||
Sbjct 1452917 CATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAG 1452976
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| || || | ||| |||| ||||| | ||||||||| | || ||||||
Sbjct 1452977 TGACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCA 1453036
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
|| | || |||| ||| |||||||||||||||||| | | | || ||||
Sbjct 1453037 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAA 1453096
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
||| ||||| ||| |||| || ||| | || || || |||| || ||
Sbjct 1453097 CATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453144
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
|||||| |||||||| || ||| |||| ||||| || | || | || || || |||
Sbjct 1453601 CATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAG 1453660
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|| | ||| || | || |||| |||||| | ||||||||| | || ||||||
Sbjct 1453661 TGATACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCA 1453720
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
|| | || |||| ||| |||||||||||||||||| ||| | || ||||
Sbjct 1453721 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAA 1453780
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
||| ||||| ||| |||| || ||| | || | || |||| || ||
Sbjct 1453781 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1453828
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
||||||||||||||| || ||| | |||||||| | | ||| | || ||||| | ||
Sbjct 1454285 CATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAG 1454344
Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950
|||| ||| || | ||| |||| |||| | || |||||| | || |||||
Sbjct 1454345 TGACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCA 1454404
Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010
||| | || |||| ||| ||||| | |||||||||| | || | |||||||
Sbjct 1454405 GCAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAA 1454464
Query 25011 CATACAGAAAGAGGCCACGCTTCA 25034
||| ||||| ||| |||| || ||
Sbjct 1454465 CATCCAGAAGGAGTCCACCCTCCA 1454488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418113449063840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |