Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq10769 105 6e-18
seq28210 95.1 1e-14
>seq10769
Length=223
Score = 105 bits (116), Expect = 6e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731
|| || ||||| || ||||||||||||||||| |||||||| | ||| || |||| | |
Sbjct 208 TCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATAGAACAA 149
Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791
|| | || |||||||| || ||||||||||||||||| || | | | ||| | |
Sbjct 148 AAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCAGC--AA 91
Query 11792 ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838
| |||| || | |||||| ||| ||||||||| || ||||| ||
Sbjct 90 AACTTGGTGAT-TCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTT 45
>seq28210
Length=470
Score = 95.1 bits (104), Expect = 1e-14
Identities = 247/372 (66%), Gaps = 11/372 (3%)
Strand=Plus/Minus
Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938
||||| | | ||| | ||||| ||||| || | | ||| |||||||||||||
Sbjct 461 TTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATG 402
Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACA 11998
|| ||||| |||||||| ||||||||| | || || ||| | || || | ||
Sbjct 401 TTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCT-CATT 343
Query 11999 TA-AAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA---AAAAATGC 12054
|| ||| | || || ||||| || || || || ||||| ||||||| ||||| ||
Sbjct 342 TACAAAATTCTCAGCCAAATTTTCGTTCACGATCCCATC---AGATGCAGCGAAAAACGC 286
Query 12055 TAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATT---TATCCCAATCATCTAA 12111
| ||||| ||||| || || |||||| | | | | | | | |||||| |
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226
Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171
||||| || |||| ||||| | |||||||||| ||| | ||| |||||||
Sbjct 225 ATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCA 166
Query 12172 TTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTAGAATCAGACTCTTGAAG 12231
| ||| | ||| || | | ||| || ||||| ||||| | || ||||| |
Sbjct 165 CTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA 106
Query 12232 AATAGGCTCCAT 12243
||||||||||||
Sbjct 105 AATAGGCTCCAT 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468305899356880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |