Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10769 105 6e-18 seq28210 95.1 1e-14 >seq10769 Length=223 Score = 105 bits (116), Expect = 6e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 || || ||||| || ||||||||||||||||| |||||||| | ||| || |||| | | Sbjct 208 TCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATAGAACAA 149 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT 11791 || | || |||||||| || ||||||||||||||||| || | | | ||| | | Sbjct 148 AAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCAGC--AA 91 Query 11792 ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 | |||| || | |||||| ||| ||||||||| || ||||| || Sbjct 90 AACTTGGTGAT-TCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTT 45 >seq28210 Length=470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 247/372 (66%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 ||||| | | ||| | ||||| ||||| || | | ||| ||||||||||||| Sbjct 461 TTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATG 402 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACA 11998 || ||||| |||||||| ||||||||| | || || ||| | || || | || Sbjct 401 TTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCT-CATT 343 Query 11999 TA-AAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA---AAAAATGC 12054 || ||| | || || ||||| || || || || ||||| ||||||| ||||| || Sbjct 342 TACAAAATTCTCAGCCAAATTTTCGTTCACGATCCCATC---AGATGCAGCGAAAAACGC 286 Query 12055 TAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATT---TATCCCAATCATCTAA 12111 | ||||| ||||| || || |||||| | | | | | | | |||||| | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 ||||| || |||| ||||| | |||||||||| ||| | ||| ||||||| Sbjct 225 ATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCA 166 Query 12172 TTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTAGAATCAGACTCTTGAAG 12231 | ||| | ||| || | | ||| || ||||| ||||| | || ||||| | Sbjct 165 CTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA 106 Query 12232 AATAGGCTCCAT 12243 |||||||||||| Sbjct 105 AATAGGCTCCAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468305899356880