Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 379 3e-100
seq28210 132 6e-26
seq354 105 9e-18
seq10769 95.1 2e-14
seq1486 87.8 2e-12
>seq1148
Length=2189075
Score = 379 bits (420), Expect = 3e-100
Identities = 1070/1636 (65%), Gaps = 13/1636 (1%)
Strand=Plus/Plus
Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
|| || ||||| || || | || | || || || || || ||||| | || ||||
Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
|| | || |||||||||| |||| || ||| || || |||| ||||| || |
Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453
Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600
| |||||| || ||||| || | || || || || || || || || | || | |
Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513
Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660
| || ||| | || || || | || || || || || || || || | |||||
Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573
Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCT 65717
|| |||| || |||||| || || ||| || || || || |||||
Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633
Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 65775
| || ||||||| | || || || || || || || ||||| ||||| | | ||
Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693
Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835
| |||| | ||||| ||||| || || || ||||||||||| || | || || |
Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751
Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895
| || ||||| || || |||||||| || || ||| | || || || || || |||
Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811
Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 65955
|||| || || || || | ||| || | || || | | ||| | |
Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGA--CCCGGCC 533869
Query 65956 CTCTTTCGTATAG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013
||| ||| |||| ||| ||||| || ||||| || ||||| | ||||| ||
Sbjct 533870 CTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCC 533929
Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073
||| || |||| |||||||| | |||||| || || || || | ||||| ||
Sbjct 533930 AGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAA 533989
Query 66074 GAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133
||||| || ||||| ||| | | || | || | || | || ||||| || |||||
Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049
Query 66134 ATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193
||||| || || || ||||| | | || ||| | |||||||| |||| ||| |||||
Sbjct 534050 GTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGC 534109
Query 66194 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253
| | || ||||| ||||| |||||||| || | ||| | || ||||| || || ||
Sbjct 534110 GAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGAC 534169
Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 66313
| || ||| || | | || ||||| | |||||||| |||| ||| ||||| ||| |
Sbjct 534170 ACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGT 534229
Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373
| ||| || || | | | || || || |||||| ||| ||||| | || ||
Sbjct 534230 GGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACA 534289
Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433
| || | ||| || |||||||| || || || || ||| ||||| || || || ||
Sbjct 534290 CTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349
Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493
||| |||| || | || | || || || || || | || || || |||||||| ||
Sbjct 534350 GCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAA 534409
Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553
|||| | || ||||| || |||||||||||||| || | || | | || ||
Sbjct 534410 CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGAT 534469
Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613
|| || || || ||||| | ||||||||| || | || | | |||| ||| || ||
Sbjct 534470 GCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTT 534529
Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673
| || ||||| |||| || || || ||||| | ||||| || ||||| || ||
Sbjct 534530 GAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTC 534589
Query 66674 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 66733
||| || || ||||||| || ||||| | | || | |||| || | ||
Sbjct 534590 GTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCT 534648
Query 66734 T-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 66792
| || || || || ||||| | ||| || ||||| |||||||| | |||||||
Sbjct 534649 TGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCA 534708
Query 66793 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGG 66852
| || || || || | || || || || ||||| || || || || || || | || |
Sbjct 534709 TGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTG 534768
Query 66853 CTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAG 66912
| | |||||||| || || || | || || ||||| || || ||||| ||||| |
Sbjct 534769 CCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCG 534828
Query 66913 TGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972
| |||| || ||||| || || ||| | || | || ||||| |||||||| | || |
Sbjct 534829 TATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCT 534888
Query 66973 TAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGA 67032
| || || | || | ||| | |||||| || | || || || || ||||
Sbjct 534889 GAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGA 534948
Query 67033 TTTTATCAAACATGAC 67048
||||||| ||||||||
Sbjct 534949 TTTTATCGAACATGAC 534964
>seq28210
Length=470
Score = 132 bits (146), Expect = 6e-26
Identities = 261/379 (69%), Gaps = 19/379 (5%)
Strand=Plus/Minus
Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463
|| ||||| || ||| || ||||| |||||||||| ||| ||| |||| ||||||
Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405
Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC- 36522
||||| || || |||||||| || |||||| | | || || | | || || ||
Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345
Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582
| |||||||| || || |||||||| ||||| || || ||| || || ||||||||
Sbjct 344 TTTACAAAAT-TCTCAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286
Query 36583 CAATACATGTTTTATAAAATATTTTTCGT-----TTGGTGTTAGTTTATTCCAATCATTG 36637
||| | ||| ||||| ||||| ||||| ||| || | | ||||||||
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGG--TGTTCCAATCCGAA 228
Query 36638 ATATCTT----TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693
| ||||| ||| | |||| ||||| | |||||||| | ||||| |||||
Sbjct 227 AGATCTTGGTGTAGGTCTATC----TCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTT 172
Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT-TTTGATTTT 36752
|||| | ||| | || || | |||||| |||||||| || |||| | || | |||
Sbjct 171 ATACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTC 112
Query 36753 TTGCAAGGATTGGTTCCAT 36771
|||||| || || |||||
Sbjct 111 TTGCAA-AATAGGCTCCAT 94
>seq354
Length=3526367
Score = 105 bits (116), Expect = 9e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
|| || || || |||| || || || |||||||| |||||||| || || ||||| |||
Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575
|| ||||||||||| | || ||||| | || ||||| || || || || | ||||| |
Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543
Query 66576 ATGTGCTGAGGTCTTTCA 66593
|||||||| ||||| |||
Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561
Score = 105 bits (116), Expect = 9e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
|| || || || |||| || || || |||||||| |||||||| || || ||||| |||
Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575
|| ||||||||||| | || ||||| | || ||||| || || || || | ||||| |
Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976
Query 66576 ATGTGCTGAGGTCTTTCA 66593
|||||||| ||||| |||
Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| |||||||| || || | ||||| || ||||| ||||| ||||| || | || | |
Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||| || | || |||||||| || || || ||||| || |||| | |||
Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170
Query 65301 CTATTTCTAAGACCGT 65316
|| ||||||| ||||
Sbjct 777171 CTGTTTCTAACGCCGT 777186
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| || ||||| ||||| || || || ||||| || | || || | |
Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
|||| || || ||||||| ||||| || || || | || || |||||||||||||
Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
|| || || |||| || ||||| | || ||||| ||||||||
Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343
>seq10769
Length=223
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 36193 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 36252
||| || ||||| ||||| || | ||||||||| | ||||| ||||| | ||| || ||
Sbjct 215 AATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAAT 156
Query 36253 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 36312
|| ||| | || ||||||||||| || || || || ||||| ||||| || | ||
Sbjct 155 AGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTC 96
Query 36313 TCCATAACCGGCACTGTCA-TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 36371
|| ||| | || | | |||||||||| |||||||| |||||||| || | |
Sbjct 95 AGCAAAACTTG----GTGATTCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTTGATAG 40
Query 36372 AAGGCATTGTCTCTATAGCATTAAAGAG-ATAGtttttt 36409
|| | | || || || |||||||| ||| | ||||
Sbjct 39 CCGGAAAATTTTCAATGGCCTTAAAGAGTATATTCTTTT 1
>seq1486
Length=661795
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| || || | |||||||| || |||||||||||||| ||||| || || |
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| || |||| || || || || || ||||| || || || || || || || |
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474
Query 36300 C 36300
|
Sbjct 352473 C 352473
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| || || | |||||||| || |||||||||||||| ||||| || || |
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| || |||| || || || || || ||||| || || || || || || || |
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418
Query 36300 C 36300
|
Sbjct 357419 C 357419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657865293440680
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