Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1148 379 3e-100 seq28210 132 6e-26 seq354 105 9e-18 seq10769 95.1 2e-14 seq1486 87.8 2e-12 >seq1148 Length=2189075 Score = 379 bits (420), Expect = 3e-100 Identities = 1070/1636 (65%), Gaps = 13/1636 (1%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || ||||| || || | || | || || || || || ||||| | || |||| Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || | || |||||||||| |||| || ||| || || |||| ||||| || | Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | |||||| || ||||| || | || || || || || || || || | || | | Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 | || ||| | || || || | || || || || || || || || | ||||| Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573 Query 65661 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCT 65717 || |||| || |||||| || || ||| || || || || ||||| Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633 Query 65718 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 65775 | || ||||||| | || || || || || || || ||||| ||||| | | || Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | |||| | ||||| ||||| || || || ||||||||||| || | || || | Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | || ||||| || || |||||||| || || ||| | || || || || || ||| Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 65955 |||| || || || || | ||| || | || || | | ||| | | Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGA--CCCGGCC 533869 Query 65956 CTCTTTCGTATAG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 ||| ||| |||| ||| ||||| || ||||| || ||||| | ||||| || Sbjct 533870 CTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCC 533929 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 ||| || |||| |||||||| | |||||| || || || || | ||||| || Sbjct 533930 AGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAA 533989 Query 66074 GAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 ||||| || ||||| ||| | | || | || | || | || ||||| || ||||| Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049 Query 66134 ATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 ||||| || || || ||||| | | || ||| | |||||||| |||| ||| ||||| Sbjct 534050 GTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGC 534109 Query 66194 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253 | | || ||||| ||||| |||||||| || | ||| | || ||||| || || || Sbjct 534110 GAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGAC 534169 Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 66313 | || ||| || | | || ||||| | |||||||| |||| ||| ||||| ||| | Sbjct 534170 ACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGT 534229 Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | ||| || || | | | || || || |||||| ||| ||||| | || || Sbjct 534230 GGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACA 534289 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | || | ||| || |||||||| || || || || ||| ||||| || || || || Sbjct 534290 CTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 ||| |||| || | || | || || || || || | || || || |||||||| || Sbjct 534350 GCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAA 534409 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 |||| | || ||||| || |||||||||||||| || | || | | || || Sbjct 534410 CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGAT 534469 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || || || || ||||| | ||||||||| || | || | | |||| ||| || || Sbjct 534470 GCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTT 534529 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 | || ||||| |||| || || || ||||| | ||||| || ||||| || || Sbjct 534530 GAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTC 534589 Query 66674 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 66733 ||| || || ||||||| || ||||| | | || | |||| || | || Sbjct 534590 GTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCT 534648 Query 66734 T-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 66792 | || || || || ||||| | ||| || ||||| |||||||| | ||||||| Sbjct 534649 TGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCA 534708 Query 66793 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGG 66852 | || || || || | || || || || ||||| || || || || || || | || | Sbjct 534709 TGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTG 534768 Query 66853 CTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAG 66912 | | |||||||| || || || | || || ||||| || || ||||| ||||| | Sbjct 534769 CCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCG 534828 Query 66913 TGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 | |||| || ||||| || || ||| | || | || ||||| |||||||| | || | Sbjct 534829 TATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCT 534888 Query 66973 TAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGA 67032 | || || | || | ||| | |||||| || | || || || || |||| Sbjct 534889 GAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGA 534948 Query 67033 TTTTATCAAACATGAC 67048 ||||||| |||||||| Sbjct 534949 TTTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 132 bits (146), Expect = 6e-26 Identities = 261/379 (69%), Gaps = 19/379 (5%) Strand=Plus/Minus Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 || ||||| || ||| || ||||| |||||||||| ||| ||| |||| |||||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC- 36522 ||||| || || |||||||| || |||||| | | || || | | || || || Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | |||||||| || || |||||||| ||||| || || ||| || || |||||||| Sbjct 344 TTTACAAAAT-TCTCAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 36583 CAATACATGTTTTATAAAATATTTTTCGT-----TTGGTGTTAGTTTATTCCAATCATTG 36637 ||| | ||| ||||| ||||| ||||| ||| || | | |||||||| Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGG--TGTTCCAATCCGAA 228 Query 36638 ATATCTT----TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | ||||| ||| | |||| ||||| | |||||||| | ||||| ||||| Sbjct 227 AGATCTTGGTGTAGGTCTATC----TCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTT 172 Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT-TTTGATTTT 36752 |||| | ||| | || || | |||||| |||||||| || |||| | || | ||| Sbjct 171 ATACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTC 112 Query 36753 TTGCAAGGATTGGTTCCAT 36771 |||||| || || ||||| Sbjct 111 TTGCAA-AATAGGCTCCAT 94 >seq354 Length=3526367 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || |||| || || || |||||||| |||||||| || || ||||| ||| Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||||||||| | || ||||| | || ||||| || || || || | ||||| | Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||| ||| Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || |||| || || || |||||||| |||||||| || || ||||| ||| Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||||||||| | || ||||| | || ||||| || || || || | ||||| | Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||| ||| Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || |||||||| || || | ||||| || ||||| ||||| ||||| || | || | | Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| || | || |||||||| || || || ||||| || |||| | ||| Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170 Query 65301 CTATTTCTAAGACCGT 65316 || ||||||| |||| Sbjct 777171 CTGTTTCTAACGCCGT 777186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||| ||||| || || || ||||| || | || || | | Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||| || || ||||||| ||||| || || || | || || ||||||||||||| Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || |||| || ||||| | || ||||| |||||||| Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343 >seq10769 Length=223 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 36193 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 36252 ||| || ||||| ||||| || | ||||||||| | ||||| ||||| | ||| || || Sbjct 215 AATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAAT 156 Query 36253 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 36312 || ||| | || ||||||||||| || || || || ||||| ||||| || | || Sbjct 155 AGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTC 96 Query 36313 TCCATAACCGGCACTGTCA-TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 36371 || ||| | || | | |||||||||| |||||||| |||||||| || | | Sbjct 95 AGCAAAACTTG----GTGATTCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTTGATAG 40 Query 36372 AAGGCATTGTCTCTATAGCATTAAAGAG-ATAGtttttt 36409 || | | || || || |||||||| ||| | |||| Sbjct 39 CCGGAAAATTTTCAATGGCCTTAAAGAGTATATTCTTTT 1 >seq1486 Length=661795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| || || || || || ||||| || || || || || || || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 36300 C 36300 | Sbjct 352473 C 352473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| || || || || || ||||| || || || || || || || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 36300 C 36300 | Sbjct 357419 C 357419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657865293440680