Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1473 109 5e-19 >seq1473 Length=2736273 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||||| || | |||| |||||||||||||| ||||| || || Sbjct 1454285 GCCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGA 1454226 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | ||||| | || ||||||||| |||||| | |||||||| || | Sbjct 1454225 TAAGGTGCGTCCA-TCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGGG 1454167 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | |||||||| ||||| |||||| || | | || || ||||| || ||| | Sbjct 1454166 GAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTCGA 1454107 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | |||||||| || | || ||||| || || ||||| Sbjct 1454106 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || | || | || ||||| || |||||||| || ||| Sbjct 1453373 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1453314 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| || ||||| |||||| | |||| | || || || ||||| Sbjct 1453313 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453254 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| || | | || |||||||| | ||| || Sbjct 1453253 AATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAAC 1453194 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || |||||||| || | || ||||| || || ||||| Sbjct 1453193 CTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || | || | || ||||| || || ||||| || || Sbjct 1453601 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1453542 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||| ||||| |||||| | |||| | || || || ||||| Sbjct 1453541 GAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453482 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||||| || | | |||||| ||||| || ||| || Sbjct 1453481 AATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAAC 1453422 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || ||||| || | || || || ||||||||||| Sbjct 1453421 CTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||||| || | || | || |||||||| || ||||| || || Sbjct 1452917 GCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1452858 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| || ||||| |||||| | |||| | ||||| || ||||| Sbjct 1452857 GAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGG 1452798 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||||| || | | ||| || ||||| || ||| || Sbjct 1452797 AATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAAC 1452738 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || ||||| || | || || || || || ||||| Sbjct 1452737 CTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||||| || | || | || ||||| || || ||||| || || Sbjct 1453145 GCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1453086 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | | || ||||| || ||||| |||||| | |||| | || || || ||||| Sbjct 1453085 GAGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGG 1453026 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| || | | || |||||||| | ||| || Sbjct 1453025 AATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAAC 1452966 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || |||||||| || | || ||||| || || ||||| Sbjct 1452965 CTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495832232698400