Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 387 2e-102
seq354 114 2e-20
seq28210 113 6e-20
seq1486 102 1e-16
>seq1148
Length=2189075
Score = 387 bits (428), Expect = 2e-102
Identities = 1251/1937 (65%), Gaps = 9/1937 (0%)
Strand=Plus/Plus
Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056
||||| || || || |||||| ||||| || | | | | || || ||||| ||
Sbjct 533031 TTCTTCATGTCCTCGCTCCATAGCCCCCTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTG 533090
Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116
|| || || || || || | || || || ||||| || || ||||| || | ||
Sbjct 533091 ACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCA 533150
Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176
| || || || || || | || || ||||| || || || ||||| || |||| ||
Sbjct 533151 ATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGC 533210
Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236
| || ||||| | ||||| ||| || || || || || ||| ||||| ||
Sbjct 533211 AGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCACAGC 533270
Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCT 79296
| || | | ||| | ||||| || || || || || || | || ||
Sbjct 533271 GGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCC 533330
Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356
| ||| || || || || || | || |||| | || || || ||||| | || ||
Sbjct 533331 GGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCG 533390
Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416
|| || | || ||||| |||| ||||||| ||| || || |||| ||||| ||
Sbjct 533391 TAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGC 533450
Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476
| | |||||| || ||||| || | || || || || || || || || | ||
Sbjct 533451 TGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGG 533510
Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536
| | | || || | || || || | || || || || || || || || | |||
Sbjct 533511 CGCATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTG 533570
Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT 79596
|| ||| |||| || |||||| || || || || || || || | ||
Sbjct 533571 AGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCG 533630
Query 79597 A---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAG 79651
| || ||||||| | ||| || || || || || || ||||| ||||| | | |
Sbjct 533631 GGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGG 533690
Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711
| | |||| | || || ||||| ||||| || ||||| ||||| || | || |
Sbjct 533691 CTGGTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 533748
Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771
| || || ||||| || || |||||||| || || ||| |||| || || || ||
Sbjct 533749 GCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTG 533808
Query 79772 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCT 79831
||||||| || || || || | ||| || | || || | | |||| |
Sbjct 533809 TCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGACCCGGC 533868
Query 79832 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891
|| | || || |||| || || || ||||| || ||||| ||||| | |
Sbjct 533869 CCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGC 533928
Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951
|||| || || | |||||||| | |||||| || | || ||| | ||||| |
Sbjct 533929 CAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGA 533988
Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011
| ||||| || ||||| ||| | | || || || | || | |||||||| || ||||
Sbjct 533989 ACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTG 534048
Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071
| ||||| || || || ||||| | | || ||| | |||||||| |||| ||| ||||
Sbjct 534049 TGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGG 534108
Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131
| | | || || || ||||| |||||||| || | ||| | || ||||| || || |
Sbjct 534109 CGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGA 534168
Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191
| | || ||| || | | || ||||| | |||||||| |||| ||| ||||| |||
Sbjct 534169 CACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAG 534228
Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251
||| ||| || || | | | || || || |||||| ||| ||||| | || |
Sbjct 534229 TGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCAC 534288
Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311
| | || | ||| || |||||||| || ||||| || || ||||| || || || |
Sbjct 534289 ACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGC 534348
Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371
|||| |||| || | || | || || || || || | || || || |||||||| |
Sbjct 534349 AGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGA 534408
Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431
||||| | || || || || |||||||||||||| || | || | | || |
Sbjct 534409 ACCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGA 534468
Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491
| || ||||| || ||||| | ||||||||| || | || | | |||| || || |
Sbjct 534469 TGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCT 534528
Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551
| | || || || |||| || || || ||||| | ||||| || ||||| || |
Sbjct 534529 TGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGT 534588
Query 80552 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATAC 80611
|||| || || ||||||| || ||||| | | || | |||| || | |
Sbjct 534589 CGTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCC 534647
Query 80612 TT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 80670
|| || || || || ||||| | ||| || || || |||||||| | ||||||
Sbjct 534648 TTGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCC 534707
Query 80671 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 80730
|| || || || || | || || || |||||||| || || || || || || | ||
Sbjct 534708 ATGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCT 534767
Query 80731 GCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 80790
|| || |||||||| || || || | || || ||||| || || ||||| |||||
Sbjct 534768 GCCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGC 534827
Query 80791 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 80850
|| |||| || ||||| || || ||| | || | || ||||| |||||||| | ||
Sbjct 534828 GTATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATC 534887
Query 80851 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTG 80910
| | || || | || | ||| | |||||| || | || || || || |||
Sbjct 534888 TGAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTG 534947
Query 80911 ATTTTATCAAACATGAC 80927
|||||||| ||||||||
Sbjct 534948 ATTTTATCGAACATGAC 534964
>seq354
Length=3526367
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| || || || |||| || || || |||||||| |||||||| || |||||||| |||
Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| ||||||||||| | || ||||| | || ||||| || ||||| || | ||||| |
Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543
Query 80455 ATGTGCTGAGGTCTTTCA 80472
|||||||| ||||| |||
Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| || || || |||| || || || |||||||| |||||||| || |||||||| |||
Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| ||||||||||| | || ||||| | || ||||| || ||||| || | ||||| |
Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976
Query 80455 ATGTGCTGAGGTCTTTCA 80472
|||||||| ||||| |||
Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| || | ||| || ||||||||||| || || || ||||| || | || || | |
Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
|||| || || ||||||| ||||| || || || | || || |||||||||||||
Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843
|| || || |||| || ||||| | || ||||| ||||||||
Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343
>seq28210
Length=470
Score = 113 bits (124), Expect = 6e-20
Identities = 256/377 (68%), Gaps = 15/377 (4%)
Strand=Plus/Minus
Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265
|| ||||| || ||| || ||||| ||||| |||| ||| ||| |||| ||||||
Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405
Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC- 50324
||||| || || || ||||| || |||||| | | || || | | || || ||
Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345
Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384
| |||||||| | |||| |||||||| ||||| || || ||| || || ||||||||
Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286
Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT---TATTCCAATCATTGAT 50441
||| | ||| ||||| |||| ||||| | || | | |||||||| |
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226
Query 50442 ATCTT----TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497
||||| ||| | ||||| ||||| || |||||||| | ||||| |||||||
Sbjct 225 ATCTTGGTGTAGGTCTATCT-CTTCTGCC---GTCCAAAAACAAGCCTCACATTTTTTAT 170
Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT-TTGGATTTGGT 50556
|| | ||| | || || | ||| || || ||||| || |||| | || | ||| |
Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110
Query 50557 GCAAGGATCGGTTCCAT 50573
|||| || || |||||
Sbjct 109 GCAA-AATAGGCTCCAT 94
>seq1486
Length=661795
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| || || || |||||||| || |||||||||||||| ||||| || || |
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| || |||| || || || || || |||||||| || || || ||||| || |
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474
Query 50102 CAAC 50105
| ||
Sbjct 352473 CCAC 352470
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| || || || |||||||| || |||||||||||||| ||||| || || |
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| || |||| || || || || || |||||||| || || || ||||| || |
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418
Query 50102 CAAC 50105
| ||
Sbjct 357419 CCAC 357422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717933215838280
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