Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1148 387 2e-102 seq354 114 2e-20 seq28210 113 6e-20 seq1486 102 1e-16 >seq1148 Length=2189075 Score = 387 bits (428), Expect = 2e-102 Identities = 1251/1937 (65%), Gaps = 9/1937 (0%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| || || || |||||| ||||| || | | | | || || ||||| || Sbjct 533031 TTCTTCATGTCCTCGCTCCATAGCCCCCTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTG 533090 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || || || || || || | || || || ||||| || || ||||| || | || Sbjct 533091 ACGCACTGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCA 533150 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || || | || || ||||| || || || ||||| || |||| || Sbjct 533151 ATGGACTCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGC 533210 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | || ||||| | ||||| ||| || || || || || ||| ||||| || Sbjct 533211 AGGCTGTTTCTCACACCGTGCTTGGCGATCTTCTCCTTGAGTAATGTCCAGTCCCACAGC 533270 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCT 79296 | || | | ||| | ||||| || || || || || || | || || Sbjct 533271 GGCGTGGGAATCCGCTGCCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCC 533330 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 | ||| || || || || || | || |||| | || || || ||||| | || || Sbjct 533331 GGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCG 533390 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 || || | || ||||| |||| ||||||| ||| || || |||| ||||| || Sbjct 533391 TAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGC 533450 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 | | |||||| || ||||| || | || || || || || || || || | || Sbjct 533451 TGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGG 533510 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 | | | || || | || || || | || || || || || || || || | ||| Sbjct 533511 CGCATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTG 533570 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT 79596 || ||| |||| || |||||| || || || || || || || | || Sbjct 533571 AGGTTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCG 533630 Query 79597 A---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAG 79651 | || ||||||| | ||| || || || || || || ||||| ||||| | | | Sbjct 533631 GGGGTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGG 533690 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | | |||| | || || ||||| ||||| || ||||| ||||| || | || | Sbjct 533691 CTGGTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 533748 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 | || || ||||| || || |||||||| || || ||| |||| || || || || Sbjct 533749 GCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTG 533808 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCT 79831 ||||||| || || || || | ||| || | || || | | |||| | Sbjct 533809 TCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGACCCGGC 533868 Query 79832 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 || | || || |||| || || || ||||| || ||||| ||||| | | Sbjct 533869 CCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGC 533928 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 |||| || || | |||||||| | |||||| || | || ||| | ||||| | Sbjct 533929 CAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGA 533988 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | ||||| || ||||| ||| | | || || || | || | |||||||| || |||| Sbjct 533989 ACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTG 534048 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 | ||||| || || || ||||| | | || ||| | |||||||| |||| ||| |||| Sbjct 534049 TGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGG 534108 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || || || ||||| |||||||| || | ||| | || ||||| || || | Sbjct 534109 CGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGA 534168 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | | || ||| || | | || ||||| | |||||||| |||| ||| ||||| ||| Sbjct 534169 CACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAG 534228 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 ||| ||| || || | | | || || || |||||| ||| ||||| | || | Sbjct 534229 TGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCAC 534288 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | | || | ||| || |||||||| || ||||| || || ||||| || || || | Sbjct 534289 ACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGC 534348 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 |||| |||| || | || | || || || || || | || || || |||||||| | Sbjct 534349 AGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGA 534408 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431 ||||| | || || || || |||||||||||||| || | || | | || | Sbjct 534409 ACCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGA 534468 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 | || ||||| || ||||| | ||||||||| || | || | | |||| || || | Sbjct 534469 TGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCT 534528 Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551 | | || || || |||| || || || ||||| | ||||| || ||||| || | Sbjct 534529 TGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGT 534588 Query 80552 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATAC 80611 |||| || || ||||||| || ||||| | | || | |||| || | | Sbjct 534589 CGTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCC 534647 Query 80612 TT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 80670 || || || || || ||||| | ||| || || || |||||||| | |||||| Sbjct 534648 TTGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCC 534707 Query 80671 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 80730 || || || || || | || || || |||||||| || || || || || || | || Sbjct 534708 ATGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCT 534767 Query 80731 GCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 80790 || || |||||||| || || || | || || ||||| || || ||||| ||||| Sbjct 534768 GCCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGC 534827 Query 80791 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 80850 || |||| || ||||| || || ||| | || | || ||||| |||||||| | || Sbjct 534828 GTATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATC 534887 Query 80851 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTG 80910 | | || || | || | ||| | |||||| || | || || || || ||| Sbjct 534888 TGAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTG 534947 Query 80911 ATTTTATCAAACATGAC 80927 |||||||| |||||||| Sbjct 534948 ATTTTATCGAACATGAC 534964 >seq354 Length=3526367 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || |||| || || || |||||||| |||||||| || |||||||| ||| Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||||||||| | || ||||| | || ||||| || ||||| || | ||||| | Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||| ||| Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || |||| || || || |||||||| |||||||| || |||||||| ||| Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||||||||| | || ||||| | || ||||| || ||||| || | ||||| | Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||| ||| Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || ||||||||||| || || || ||||| || | || || | | Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||| || || ||||||| ||||| || || || | || || ||||||||||||| Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || |||| || ||||| | || ||||| |||||||| Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343 >seq28210 Length=470 Score = 113 bits (124), Expect = 6e-20 Identities = 256/377 (68%), Gaps = 15/377 (4%) Strand=Plus/Minus Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 || ||||| || ||| || ||||| ||||| |||| ||| ||| |||| |||||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC- 50324 ||||| || || || ||||| || |||||| | | || || | | || || || Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | |||||||| | |||| |||||||| ||||| || || ||| || || |||||||| Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT---TATTCCAATCATTGAT 50441 ||| | ||| ||||| |||| ||||| | || | | |||||||| | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 50442 ATCTT----TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 ||||| ||| | ||||| ||||| || |||||||| | ||||| ||||||| Sbjct 225 ATCTTGGTGTAGGTCTATCT-CTTCTGCC---GTCCAAAAACAAGCCTCACATTTTTTAT 170 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT-TTGGATTTGGT 50556 || | ||| | || || | ||| || || ||||| || |||| | || | ||| | Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110 Query 50557 GCAAGGATCGGTTCCAT 50573 |||| || || ||||| Sbjct 109 GCAA-AATAGGCTCCAT 94 >seq1486 Length=661795 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || |||||||||||||| ||||| || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || ||||| || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 50102 CAAC 50105 | || Sbjct 352473 CCAC 352470 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || |||||||||||||| ||||| || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || ||||| || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 50102 CAAC 50105 | || Sbjct 357419 CCAC 357422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717933215838280