Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq28210 102 8e-17 seq10769 98.7 1e-15 >seq28210 Length=470 Score = 102 bits (112), Expect = 8e-17 Identities = 216/319 (68%), Gaps = 9/319 (3%) Strand=Plus/Minus Query 14145 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204 || |||||||| || | | ||| |||| || || ||||| ||||| || ||||| Sbjct 440 TAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAAC 381 Query 14205 CCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGT---AAAATCTTTCGGCCAAA 14261 ||||| || | | |||||||| |||| || || | | ||||| | || |||||| Sbjct 380 CCATAGAAAAACTTCGCTTCCGAATATTGGACCTC--ATTTACAAAAT-TCTCAGCCAAA 324 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 ||||| || || || |||||| || || ||||| ||||| || | || || || || Sbjct 323 TTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAG 264 Query 14322 TGCTCTTCATTGTTGAGTT---TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCA 14378 | || |||| ||||| | | |||||||| || | ||| | || |||| || Sbjct 263 CGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCT 204 Query 14379 TCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT 14438 || | |||||||||| ||| || |||||||||| |||| | || | | | Sbjct 203 TCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGA 144 Query 14439 ATAGGAAAAACTACAAATC 14457 || ||||||| ||| |||| Sbjct 143 ATGGGAAAAATTACGAATC 125 >seq10769 Length=223 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 ||||||||||| || ||||| ||||||||||| |||||||| ||||| || || | | | Sbjct 208 TCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATAGAACAA 149 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 || | ||| |||||||| || ||||| || || ||||| || || | ||||| |||| Sbjct 148 AAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCAGCAAA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479503865081800