Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq28210 102 8e-17
seq10769 98.7 1e-15
>seq28210
Length=470
Score = 102 bits (112), Expect = 8e-17
Identities = 216/319 (68%), Gaps = 9/319 (3%)
Strand=Plus/Minus
Query 14145 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204
|| |||||||| || | | ||| |||| || || ||||| ||||| || |||||
Sbjct 440 TAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAAC 381
Query 14205 CCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGT---AAAATCTTTCGGCCAAA 14261
||||| || | | |||||||| |||| || || | | ||||| | || ||||||
Sbjct 380 CCATAGAAAAACTTCGCTTCCGAATATTGGACCTC--ATTTACAAAAT-TCTCAGCCAAA 324
Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321
||||| || || || |||||| || || ||||| ||||| || | || || || ||
Sbjct 323 TTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAG 264
Query 14322 TGCTCTTCATTGTTGAGTT---TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCA 14378
| || |||| ||||| | | |||||||| || | ||| | || |||| ||
Sbjct 263 CGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCT 204
Query 14379 TCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT 14438
|| | |||||||||| ||| || |||||||||| |||| | || | | |
Sbjct 203 TCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGA 144
Query 14439 ATAGGAAAAACTACAAATC 14457
|| ||||||| ||| ||||
Sbjct 143 ATGGGAAAAATTACGAATC 125
>seq10769
Length=223
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973
||||||||||| || ||||| ||||||||||| |||||||| ||||| || || | | |
Sbjct 208 TCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAATAGAACAA 149
Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032
|| | ||| |||||||| || ||||| || || ||||| || || | ||||| ||||
Sbjct 148 AAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTCAGCAAA 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479503865081800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |