Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1148 361 7e-95 seq28210 138 2e-27 seq354 105 9e-18 seq1486 84.2 3e-11 >seq1148 Length=2189075 Score = 361 bits (400), Expect = 7e-95 Identities = 1053/1611 (65%), Gaps = 13/1611 (1%) Strand=Plus/Plus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || || ||||| | || | || || | || ||||| |||| ||| Sbjct 533359 CGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATAT 533418 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| || | | |||||| || ||||| || | Sbjct 533419 TGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCA 533478 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| || || || || | ||| | | | || || | || || || | Sbjct 533479 GCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGCCTCAGGCA 533538 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || || || | ||||| || |||| || |||||| || Sbjct 533539 CCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGG 533598 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || || || || || || | | || | || ||| ||| | || || | Sbjct 533599 CCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGGGTGACGTACATGTTGAGCGCCACGG 533658 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | || || || || ||||| ||||| | | || || |||| | || || ||||| Sbjct 533659 AGGCTAGGTTGCACACGGCCACCTCGTCCTGGCT--GGTGTATTCGACGATCTCCGTGCA 533716 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || ||||||||||| || | || || || || ||||| || || ||||| Sbjct 533717 CAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATC 533776 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||| || || || |||| || || || || ||||||| || || || || | ||| || Sbjct 533777 CTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACAC 533836 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 | || || | | |||| | || | || || |||| || || Sbjct 533837 CTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGC 533896 Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 || ||||| || ||||| ||| | ||| | ||||| || ||||| |||||||| | | Sbjct 533897 CTCAAACTCATCACCCCA-GCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCG 533955 Query 72002 ACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 |||| || | | || | ||| | ||||| || ||||| || ||||| ||| | | Sbjct 533956 ACCAGTCCTGGTTGCTC-TCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAG 534014 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || || || | || | |||||||| || ||||| ||||| || || || ||||| | Sbjct 534015 AACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCG 534074 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | || ||| | |||||||| |||| ||| ||||| | | || ||||| ||||| ||| Sbjct 534075 AAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCT 534134 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||| | || ||||| || || || | || ||| || | | || ||| Sbjct 534135 CCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTG 534194 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300 || |||||||| |||| ||| ||||| ||| ||| ||| || ||| | | | Sbjct 534195 GAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACG 534254 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || |||||| ||| ||||| | || || | || | ||| || |||||||| Sbjct 534255 CCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCA 534314 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || || ||| ||||| || || || ||||| |||| || | || | || Sbjct 534315 TCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTG 534374 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || || || || | || || || |||||||| |||||| | || || || || |||||| Sbjct 534375 CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTAC 534434 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 |||||||| || | || | | || || || ||||| || ||||| | ||| Sbjct 534435 GTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATG 534494 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| || | || | | |||| || || || | || ||||| |||| || Sbjct 534495 TGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTC 534554 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || ||||| | ||||| || ||||| || ||||| || || |||| || || Sbjct 534555 TTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGTAGATGATGGCCGAGTTCAGGCGG 534614 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCC 72719 ||||| | | || || |||| || | ||| || || || || ||||| | Sbjct 534615 TCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCTTGGAGATCATAGGCGAATGACGGCG 534673 Query 72720 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 72779 ||| || || || |||||||| | |||||||| || || || || | || || || Sbjct 534674 ATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCATGACATCGCTGAACACCTTCTTGGT 534733 Query 72780 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTG 72839 |||||||| || || || || || || | || || | |||||||| || || || | Sbjct 534734 CTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGCCAAGATGGCATAGTCGGGGTGCTT 534793 Query 72840 TGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 72899 || || ||||| || || || || ||||| || |||| || ||||| || || || Sbjct 534794 GGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGTATCCAGCTCCACCGTGGTCACACC 534853 Query 72900 ATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTT 72959 | | || | || ||||| |||||||| | || | | || || | || | ||| Sbjct 534854 ACTGTACAGGCCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACGAAGTCCGGGTT 534913 Query 72960 TAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010 | |||||| || | || || || || ||||||||||| ||||| || Sbjct 534914 GAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 138 bits (152), Expect = 2e-27 Identities = 259/373 (69%), Gaps = 7/373 (2%) Strand=Plus/Minus Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 || ||||| || ||| || ||||| ||||| |||| ||| ||| ||||||||||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC- 42429 ||||| || || || ||||| || |||||| | | || || | | || || || Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | |||||||| | |||| |||||||||||||| || || ||| || || |||||||| Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAATCATTGAT 42546 ||| | ||| ||||| ||||| |||||| | || | | |||||||| | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||||| || |||| |||||| |||||||||| | || || ||||||||| Sbjct 225 ATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCA 166 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT-TTGGATTTGGTGCAA 42665 | ||| | ||| || | |||||| || ||||| || |||| | || | ||| ||||| Sbjct 165 CTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA 106 Query 42666 GGATCGGTTCCAT 42678 || || ||||| Sbjct 105 -AATAGGCTCCAT 94 >seq354 Length=3526367 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || || || |||| || || || |||||||| |||||||| || |||||||| ||| Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || ||||||||||| | || ||||| | || || || || ||||| || | ||||| | Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543 Query 72538 ATATGCTGAGGTCTTTCA 72555 || ||||| ||||| ||| Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || || || |||| || || || |||||||| |||||||| || |||||||| ||| Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || ||||||||||| | || ||||| | || || || || ||||| || | ||||| | Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976 Query 72538 ATATGCTGAGGTCTTTCA 72555 || ||||| ||||| ||| Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || ||||||||||| || || || ||||| || | || || || | Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || ||||||| ||||| || || || | ||||| ||||||||||||| Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || |||| || ||||| | || ||||| |||||||| Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343 >seq1486 Length=661795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || || || |||||||| || || || || || || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 42207 C 42207 | Sbjct 352473 C 352473 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || || || |||||||| || || || || || || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 42207 C 42207 | Sbjct 357419 C 357419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670825635376520