Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 361 7e-95
seq28210 138 2e-27
seq354 105 9e-18
seq1486 84.2 3e-11
>seq1148
Length=2189075
Score = 361 bits (400), Expect = 7e-95
Identities = 1053/1611 (65%), Gaps = 13/1611 (1%)
Strand=Plus/Plus
Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467
|||| || || || || ||||| | || | || || | || ||||| |||| |||
Sbjct 533359 CGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGAAGATCTGAATAT 533418
Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527
|||| ||| || || ||||| ||||| || | | |||||| || ||||| || |
Sbjct 533419 TGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGCCGCATGAGAATGAAGGCGTCGGCCA 533478
Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587
|| || ||||| || || || || | ||| | | | || || | || || || |
Sbjct 533479 GCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAGCGCTGCGCCTCAGGCA 533538
Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647
|| || || || || || || || | ||||| || |||| || |||||| ||
Sbjct 533539 CCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACGATGACTTTGGTGACGG 533598
Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704
|| || || || || || | | || | || ||| ||| | || || |
Sbjct 533599 CCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGGGTGACGTACATGTTGAGCGCCACGG 533658
Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762
| || || || || ||||| ||||| | | || || |||| | || || |||||
Sbjct 533659 AGGCTAGGTTGCACACGGCCACCTCGTCCTGGCT--GGTGTATTCGACGATCTCCGTGCA 533716
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
|| || || ||||||||||| || | || || || || ||||| || || |||||
Sbjct 533717 CAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATC 533776
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882
||| || || || |||| || || || || ||||||| || || || || | ||| ||
Sbjct 533777 CTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACAC 533836
Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942
| || || | | |||| | || | || || |||| || ||
Sbjct 533837 CTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCTCCTTCTCATAGCGTGTGTACAAAGC 533896
Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001
|| ||||| || ||||| ||| | ||| | ||||| || ||||| |||||||| | |
Sbjct 533897 CTCAAACTCATCACCCCA-GCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCG 533955
Query 72002 ACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060
|||| || | | || | ||| | ||||| || ||||| || ||||| ||| | |
Sbjct 533956 ACCAGTCCTGGTTGCTC-TCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAG 534014
Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120
|| || || | || | |||||||| || ||||| ||||| || || || ||||| |
Sbjct 534015 AACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGTTCTTCTTCAGCTCCAGGAAGTCG 534074
Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180
| || ||| | |||||||| |||| ||| ||||| | | || ||||| ||||| |||
Sbjct 534075 AAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCT 534134
Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240
||||| || | ||| | || ||||| || || || | || ||| || | | || |||
Sbjct 534135 CCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTG 534194
Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300
|| |||||||| |||| ||| ||||| ||| ||| ||| || ||| | | |
Sbjct 534195 GAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACG 534254
Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360
|| || || |||||| ||| ||||| | || || | || | ||| || ||||||||
Sbjct 534255 CCGATGCCACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCA 534314
Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420
|| || || || ||| ||||| || || || ||||| |||| || | || | ||
Sbjct 534315 TCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTGGTG 534374
Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480
|| || || || | || || || |||||||| |||||| | || || || || ||||||
Sbjct 534375 CCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGGTTGTAC 534434
Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540
|||||||| || | || | | || || || ||||| || ||||| | |||
Sbjct 534435 GTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATG 534494
Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600
||||| || | || | | |||| || || || | || ||||| |||| ||
Sbjct 534495 TGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTC 534554
Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660
|| || ||||| | ||||| || ||||| || ||||| || || |||| || ||
Sbjct 534555 TTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGTAGATGATGGCCGAGTTCAGGCGG 534614
Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCC 72719
||||| | | || || |||| || | ||| || || || || ||||| |
Sbjct 534615 TCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCTTGGAGATCATAGGCGAATGACGGCG 534673
Query 72720 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 72779
||| || || || |||||||| | |||||||| || || || || | || || ||
Sbjct 534674 ATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCATGACATCGCTGAACACCTTCTTGGT 534733
Query 72780 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTG 72839
|||||||| || || || || || || | || || | |||||||| || || || |
Sbjct 534734 CTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGCCAAGATGGCATAGTCGGGGTGCTT 534793
Query 72840 TGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 72899
|| || ||||| || || || || ||||| || |||| || ||||| || || ||
Sbjct 534794 GGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGTATCCAGCTCCACCGTGGTCACACC 534853
Query 72900 ATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTT 72959
| | || | || ||||| |||||||| | || | | || || | || | |||
Sbjct 534854 ACTGTACAGGCCCTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACGAAGTCCGGGTT 534913
Query 72960 TAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010
| |||||| || | || || || || ||||||||||| ||||| ||
Sbjct 534914 GAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGATTTTATCGAACATGAC 534964
>seq28210
Length=470
Score = 138 bits (152), Expect = 2e-27
Identities = 259/373 (69%), Gaps = 7/373 (2%)
Strand=Plus/Minus
Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370
|| ||||| || ||| || ||||| ||||| |||| ||| ||| |||||||||||
Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405
Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC- 42429
||||| || || || ||||| || |||||| | | || || | | || || ||
Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345
Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489
| |||||||| | |||| |||||||||||||| || || ||| || || ||||||||
Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286
Query 42490 CAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAATCATTGAT 42546
||| | ||| ||||| ||||| |||||| | || | | |||||||| |
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226
Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606
||||| || |||| |||||| |||||||||| | || || |||||||||
Sbjct 225 ATCTTGGTGTAGGTCTATCTCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTATACCA 166
Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT-TTGGATTTGGTGCAA 42665
| ||| | ||| || | |||||| || ||||| || |||| | || | ||| |||||
Sbjct 165 CTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTTGCAA 106
Query 42666 GGATCGGTTCCAT 42678
|| || |||||
Sbjct 105 -AATAGGCTCCAT 94
>seq354
Length=3526367
Score = 105 bits (116), Expect = 9e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
|| || || || |||| || || || |||||||| |||||||| || |||||||| |||
Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537
|| ||||||||||| | || ||||| | || || || || ||||| || | ||||| |
Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543
Query 72538 ATATGCTGAGGTCTTTCA 72555
|| ||||| ||||| |||
Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561
Score = 105 bits (116), Expect = 9e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
|| || || || |||| || || || |||||||| |||||||| || |||||||| |||
Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916
Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537
|| ||||||||||| | || ||||| | || || || || ||||| || | ||||| |
Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976
Query 72538 ATATGCTGAGGTCTTTCA 72555
|| ||||| ||||| |||
Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | ||| || ||||||||||| || || || ||||| || | || || || |
Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||| || || ||||||| ||||| || || || | ||||| |||||||||||||
Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| || || |||| || ||||| | || ||||| ||||||||
Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343
>seq1486
Length=661795
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || || | |||||||| || |||||||||||||| ||||| || || |
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || || || || |||||||| || || || || || || |
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474
Query 42207 C 42207
|
Sbjct 352473 C 352473
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || || | |||||||| || |||||||||||||| ||||| || || |
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || || || || |||||||| || || || || || || |
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418
Query 42207 C 42207
|
Sbjct 357419 C 357419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670825635376520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |