Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1148 199 6e-46 seq1486 98.7 1e-15 seq1186 89.7 8e-13 >seq1148 Length=2189075 Score = 199 bits (220), Expect = 6e-46 Identities = 374/549 (68%), Gaps = 18/549 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || || |||||| ||| ||||| ||||| ||||| | | ||||| | | | || Sbjct 534208 ACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACACGGCGCGC 534149 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || ||||| ||||| | ||| | ||| |||| || ||| Sbjct 534148 TACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCCTTCGCCATGTACCTGGAGCCGTGG 534089 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||| | || ||||| | ||| || || ||| | ||| || ||| || Sbjct 534088 CACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAGAGGAGCAGCGC 534029 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||| | ||| |||| | | |||||| | |||||| ||||||||||| | || | Sbjct 534028 GCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAGGGTAGAGAGC 533969 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| || ||||| || | || || || ||| ||| ||| Sbjct 533968 AACCAGG------ACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACGAGTGC 533915 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 ||||| || ||||||||||| |||||| ||| ||| | |||||||| || | Sbjct 533914 TGGGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGG---GTCAAG 533858 Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | | || | | ||||| | |||||| | | ||||| |||||| || Sbjct 533857 CGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACGGGC 533798 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || |||||||| |||||||||||| | |||||||| |||||||| | || ||||| Sbjct 533797 ACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTGGGC 533738 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 ||||||||| || ||| ||||||||||| || || || ||| || | ||||||| | Sbjct 533737 ACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAGGTG 533678 Query 97338 GCAGTTTGC 97346 || || ||| Sbjct 533677 GCCGTGTGC 533669 >seq1486 Length=661795 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| |||||||||||||| || || || || |||||||| | Sbjct 352468 TGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCT 352527 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| ||||| ||||| || ||||||||||| || Sbjct 352528 GGCTGAAGAAACGCGGCCTGATGCCCGGACTCAC 352561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| |||||||||||||| || || || || |||||||| | Sbjct 357424 TGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCT 357365 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| ||||| ||||| || ||||||||||| || Sbjct 357364 GGCTGAAGAAACGCGGCCTGATGCCCGGACTCAC 357331 >seq1186 Length=767023 Score = 89.7 bits (98), Expect = 8e-13 Identities = 113/156 (72%), Gaps = 12/156 (8%) Strand=Plus/Minus Query 127392 CACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCGG- 127443 |||||||||||||||| ||| || |||| || || || || | | || | | Sbjct 739280 CACCTTGTACGGCATGGATTCAAAGAAGATGGACGTTGCAGAGATTTTTTTCTTTTCAGT 739221 Query 127444 ----AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTG 127499 || ||||| |||||||| ||||| || || || || || |||||||||||||| || Sbjct 739220 CATGAAGCCGTGTGTCAGGTGACCTCCATCAGGAAGGTCCAGGCCCATGATTCTACCATG 739161 Query 127500 CGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535 ||||| || || | ||||| || ||||||||||| Sbjct 739160 CGGTTCCACAATGGCGGTGTAAACAGCAAAGTTGGC 739125 Score = 89.7 bits (98), Expect = 8e-13 Identities = 113/156 (72%), Gaps = 12/156 (8%) Strand=Plus/Minus Query 127392 CACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCG-- 127442 |||||||||||||||| ||| || |||| || || || || | | || || Sbjct 745200 CACCTTGTACGGCATGGATTCAAAGAAGATGGACGTTGCAGAGATTTTTTTCTTTTCGAT 745141 Query 127443 ---GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTG 127499 ||| ||||| |||||||| ||||| || || || || || |||||||||||||| || Sbjct 745140 CATGAAGCCGTGTGTCAGGTGACCTCCATCAGGAAGGTCCAGGCCCATGATTCTACCATG 745081 Query 127500 CGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535 ||||| || || | ||| | || ||||||||||| Sbjct 745080 CGGTTCCACAATGGCGGTGAAAACAGCAAAGTTGGC 745045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740712967878520