Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 199 6e-46
seq1486 98.7 1e-15
seq1186 89.7 8e-13
>seq1148
Length=2189075
Score = 199 bits (220), Expect = 6e-46
Identities = 374/549 (68%), Gaps = 18/549 (3%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| || |||||| ||| ||||| ||||| ||||| | | ||||| | | | ||
Sbjct 534208 ACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACACGGCGCGC 534149
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||| ||||| || ||||| ||||| | ||| | ||| |||| || |||
Sbjct 534148 TACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCCTTCGCCATGTACCTGGAGCCGTGG 534089
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||| ||| | || ||||| | ||| || || ||| | ||| || ||| ||
Sbjct 534088 CACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAGAGGAGCAGCGC 534029
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040
||| | ||| |||| | | |||||| | |||||| ||||||||||| | || |
Sbjct 534028 GCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAGGGTAGAGAGC 533969
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
||| | | ||||| || ||||| || | || || || ||| ||| |||
Sbjct 533968 AACCAGG------ACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACGAGTGC 533915
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160
||||| || ||||||||||| |||||| ||| ||| | |||||||| || |
Sbjct 533914 TGGGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGGCCGG---GTCAAG 533858
Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217
|| || | | || | | ||||| | |||||| | | ||||| |||||| ||
Sbjct 533857 CGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACGGGC 533798
Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277
|| |||||||| |||||||||||| | |||||||| |||||||| | || |||||
Sbjct 533797 ACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTGGGC 533738
Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337
||||||||| || ||| ||||||||||| || || || ||| || | ||||||| |
Sbjct 533737 ACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAGGTG 533678
Query 97338 GCAGTTTGC 97346
|| || |||
Sbjct 533677 GCCGTGTGC 533669
>seq1486
Length=661795
Score = 98.7 bits (108), Expect = 1e-15
Identities = 78/94 (83%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
||||||| ||||||||||| |||||||||||||| || || || || |||||||| |
Sbjct 352468 TGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCT 352527
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|||| ||||| ||||| || ||||||||||| ||
Sbjct 352528 GGCTGAAGAAACGCGGCCTGATGCCCGGACTCAC 352561
Score = 98.7 bits (108), Expect = 1e-15
Identities = 78/94 (83%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
||||||| ||||||||||| |||||||||||||| || || || || |||||||| |
Sbjct 357424 TGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCT 357365
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|||| ||||| ||||| || ||||||||||| ||
Sbjct 357364 GGCTGAAGAAACGCGGCCTGATGCCCGGACTCAC 357331
>seq1186
Length=767023
Score = 89.7 bits (98), Expect = 8e-13
Identities = 113/156 (72%), Gaps = 12/156 (8%)
Strand=Plus/Minus
Query 127392 CACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCGG- 127443
|||||||||||||||| ||| || |||| || || || || | | || | |
Sbjct 739280 CACCTTGTACGGCATGGATTCAAAGAAGATGGACGTTGCAGAGATTTTTTTCTTTTCAGT 739221
Query 127444 ----AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTG 127499
|| ||||| |||||||| ||||| || || || || || |||||||||||||| ||
Sbjct 739220 CATGAAGCCGTGTGTCAGGTGACCTCCATCAGGAAGGTCCAGGCCCATGATTCTACCATG 739161
Query 127500 CGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535
||||| || || | ||||| || |||||||||||
Sbjct 739160 CGGTTCCACAATGGCGGTGTAAACAGCAAAGTTGGC 739125
Score = 89.7 bits (98), Expect = 8e-13
Identities = 113/156 (72%), Gaps = 12/156 (8%)
Strand=Plus/Minus
Query 127392 CACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCG-- 127442
|||||||||||||||| ||| || |||| || || || || | | || ||
Sbjct 745200 CACCTTGTACGGCATGGATTCAAAGAAGATGGACGTTGCAGAGATTTTTTTCTTTTCGAT 745141
Query 127443 ---GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTG 127499
||| ||||| |||||||| ||||| || || || || || |||||||||||||| ||
Sbjct 745140 CATGAAGCCGTGTGTCAGGTGACCTCCATCAGGAAGGTCCAGGCCCATGATTCTACCATG 745081
Query 127500 CGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535
||||| || || | ||| | || |||||||||||
Sbjct 745080 CGGTTCCACAATGGCGGTGAAAACAGCAAAGTTGGC 745045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740712967878520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |