Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1473 91.5 1e-13 >seq1473 Length=2736273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| |||||| || ||||||||||||| || ||||| |||| | ||||||| Sbjct 1453758 CATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTT 1453699 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || |||||| || || | |||||||||| | ||| || || | || | Sbjct 1453698 TGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGA 1453639 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || |||| ||||||||||||||||||||| Sbjct 1453638 CAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCATG 1453601 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| |||||| || ||||||||||||| |||||||| |||| | ||||||| Sbjct 1452846 CATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTT 1452787 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATC--TGCCGGCTCCACATCGACCGT 44082 | || |||||| ||||| | ||||||| || || | ||| || || | || Sbjct 1452786 TGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTC--CTCAACCTCAAGGGT 1452729 Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || ||||| || || | ||||||||||| || |||||| Sbjct 1452728 GATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| ||||| || ||||| ||||||| |||||| || |||| | |||||| | Sbjct 1452390 CATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCT 1452331 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATC--TGCCGGCTCCACATCGACCGT 44082 | || ||||| ||| || | ||||||| || |||| || || || | || Sbjct 1452330 TGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCT--TCAACCTCAAGGGT 1452273 Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || |||| ||||||||||| |||||||| Sbjct 1452272 GATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354615987383796