Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 91.5 1e-13
>seq1473
Length=2736273
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| |||| |||||| || ||||||||||||| || ||||| |||| | |||||||
Sbjct 1453758 CATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTT 1453699
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| || |||||| || || | |||||||||| | ||| || || | || |
Sbjct 1453698 TGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGA 1453639
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| || || |||| |||||||||||||||||||||
Sbjct 1453638 CAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCATG 1453601
Score = 89.7 bits (98), Expect = 4e-13
Identities = 117/160 (73%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| |||| |||||| || ||||||||||||| |||||||| |||| | |||||||
Sbjct 1452846 CATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTT 1452787
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATC--TGCCGGCTCCACATCGACCGT 44082
| || |||||| ||||| | ||||||| || || | ||| || || | ||
Sbjct 1452786 TGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTC--CTCAACCTCAAGGGT 1452729
Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| ||||| || || | ||||||||||| || ||||||
Sbjct 1452728 GATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 1452689
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/159 (72%), Gaps = 4/159 (3%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||| ||||| || ||||| ||||||| |||||| || |||| | |||||| |
Sbjct 1452390 CATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCT 1452331
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATC--TGCCGGCTCCACATCGACCGT 44082
| || ||||| ||| || | ||||||| || |||| || || || | ||
Sbjct 1452330 TGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCT--TCAACCTCAAGGGT 1452273
Query 44083 AATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || || |||| ||||||||||| ||||||||
Sbjct 1452272 GATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354615987383796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |