Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 170 4e-37
seq1247 95.1 3e-14
seq1476 87.8 4e-12
seq283 84.2 5e-11
>seq1473
Length=2736273
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||||||||| || || || ||||| || || | || |||
Sbjct 1455181 AGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCT 1455122
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|||| |||||| |||||||| || | ||||||||||||||| || |||||||| || |||
Sbjct 1455121 TCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCC 1455062
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| || || ||||| ||||| || || || || || || ||||| || || || |||
Sbjct 1455061 TGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTC 1455002
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||||||| || || ||||| ||||||||
Sbjct 1455001 TTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | || || ||||| | || ||||| ||||| || || ||||||
Sbjct 1454059 ATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 1454000
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| |||||||| |||||||| || | ||||||||| ||||||
Sbjct 1453999 GAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453940
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || || || ||||| || || || || || ||
Sbjct 1453939 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCA 1453880
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || ||||| |||||||| ||||| ||||||||||||||
Sbjct 1453879 ACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 159 bits (176), Expect = 8e-34
Identities = 175/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| ||||| || | || || ||||| | || || |||||||| || || ||||||
Sbjct 1452463 ATTCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1452404
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| | ||||| |||||||| || | ||| || |||||||||
Sbjct 1452403 GAGAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGA 1452344
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || ||||| ||||| || || || || || |||
Sbjct 1452343 GGAATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCA 1452284
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| ||||| || || || ||||| || ||||||||
Sbjct 1452283 ACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| | || || || ||||| || || |||||
Sbjct 2587959 ATGCCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 2587900
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
||||| || | || ||||||||||| || |||||||| || | |||||| || || ||
Sbjct 2587899 GATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 2587840
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || ||||| ||||| || | ||| || || |||||
Sbjct 2587839 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCA 2587780
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| || || || || || ||||||||
Sbjct 2587779 ACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| ||| | || || ||||| | |||| || || || || || || |||
Sbjct 1454971 ATGCCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCA 1454912
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || |||||||| || ||||||||||| || ||||| ||||| |||||
Sbjct 1454911 GAGAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGG 1454852
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || || || ||||| || || ||||| | | |||
Sbjct 1454851 GGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCA 1454792
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| || || || ||||| | ||||||
Sbjct 1454791 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || || || || || ||||| || || || | || |||
Sbjct 2588169 AGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATCT 2588110
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|||||||| || |||||||| || | |||||| || || || || || ||||| || |||
Sbjct 2588109 TCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 2588050
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| || || ||||| ||||| || | ||| || || ||||| ||||| || || || |||
Sbjct 2588049 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATTGTC 2587990
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || || ||||||||
Sbjct 2587989 TTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958
Score = 136 bits (150), Expect = 9e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| | || || || ||||| || || |||||
Sbjct 2587731 ATGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCT 2587672
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || ||||||||||| | |||||| || || ||
Sbjct 2587671 GAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGG 2587612
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || ||||| ||||| || | || || || || ||
Sbjct 2587611 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCA 2587552
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| ||||| || || || ||||| |||||||| ||
Sbjct 2587551 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || ||||| || ||| | ||||| ||| | || ||
Sbjct 1454482 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCG 1454423
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||| || || || || || ||||| || || || || | || ||
Sbjct 1454422 GCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTG 1454363
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || || || || |||| || ||||| || || | | ||| || ||||| ||
Sbjct 1454362 ACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTC 1454303
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||||||||||||
Sbjct 1454302 TTCACAAATATCTGCAT 1454286
>seq1247
Length=1231281
Score = 95.1 bits (104), Expect = 3e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| |||||||| || || || || || ||||| || || || || ||||| |||| |||
Sbjct 216473 GTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTACTGG 216414
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||||||||||||| ||||| || | || | ||| ||||| | || ||| |||||
Sbjct 216413 TTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTCATCAGCCGGGAC 216354
Query 269258 GA 269259
||
Sbjct 216353 GA 216352
>seq1476
Length=595132
Score = 87.8 bits (96), Expect = 4e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
||||| |||||||||| ||||| ||||| || |||||||| || || | || ||||||
Sbjct 446646 GCATTGTGGTGGTATTTCATCTCCAAAGGCATCGAATACCTGGACACGGTGTTTTTCATC 446587
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | || || || | || | | ||||| || || || || || | || |||||
Sbjct 446586 CTGAGGAAAAAGTTCAGCCAGGTCACCTTTCTGCACGTTTACCACCACTGCACCATGTTC 446527
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
|| | | ||||| || || |||||| | |||||||||||
Sbjct 446526 ACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 446486
>seq283
Length=744451
Score = 84.2 bits (92), Expect = 5e-11
Identities = 115/159 (72%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
||||||||||| ||||| ||||| | || | ||| || || ||||||||||||| |
Sbjct 90652 TGGTGGTATTACATCTCCAAAGGGGTGGAGTTCCTGGACACCGTCTTCTTCATCCTGAGG 90711
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT--TACTT 78611
||||| || || || | || || || || || |||||||| | || ||||| | ||
Sbjct 90712 AAGAAGTTCAACCAGGTCAGCTTCCTCCACGTCTATCATCACTGCACCATGTTCATCCTC 90771
Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
||| ||||| || || || ||| || | || || ||||
Sbjct 90772 TGG--TGGATCGGCATCAAGTGGGTCCCTGGTGGGCAAG 90808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150847003581916
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