Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1473 170 4e-37 seq1247 95.1 3e-14 seq1476 87.8 4e-12 seq283 84.2 5e-11 >seq1473 Length=2736273 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || || ||||| || || | || ||| Sbjct 1455181 AGGACAAGATGGAGGGTTGATTCTTTCTGGATGTTGTAATCAGAGAGTGTGCGGCCATCT 1455122 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| |||||| |||||||| || | ||||||||||||||| || |||||||| || ||| Sbjct 1455121 TCTAATTGTTTGCCAGCAAATATCAACCTCTGTTGATCAGGGGGAATTCCTTCCTTGTCC 1455062 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||| ||||| || || || || || || ||||| || || || ||| Sbjct 1455061 TGGATTTTGGCTTTCACATTCTCAACCGTGTCACTGTCCTCAACCTCAAGAGTGATGGTC 1455002 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| || || ||||| |||||||| Sbjct 1455001 TTACCAGTAAGGGTCTTCACAAAAATCTGCAT 1454970 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | || ||||| ||||| || || |||||| Sbjct 1454059 ATGCCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 1454000 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| |||||||| |||||||| || | ||||||||| |||||| Sbjct 1453999 GAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGA 1453940 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || || || || || || Sbjct 1453939 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCA 1453880 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| |||||||| ||||| |||||||||||||| Sbjct 1453879 ACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || || ||||| | || || |||||||| || || |||||| Sbjct 1452463 ATTCCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1452404 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | ||||| |||||||| || | ||| || ||||||||| Sbjct 1452403 GAGAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGA 1452344 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || || || || || ||| Sbjct 1452343 GGAATACCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCA 1452284 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| || |||||||| Sbjct 1452283 ACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 1452231 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 2587959 ATGCCACCCCTGAGACGCAGGACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 2587900 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| || | || ||||||||||| || |||||||| || | |||||| || || || Sbjct 2587899 GATAGTGTACGGCCATCTTCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 2587840 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || | ||| || || ||||| Sbjct 2587839 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCA 2587780 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 2587779 ACCTCAAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 2587730 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| ||| | || || ||||| | |||| || || || || || || ||| Sbjct 1454971 ATGCCACCTCGTAGACGCAGGACGAGATGAAGCGTAGCCTCCTTTTGGATGTTGTAATCA 1454912 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || |||||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 1454911 GAGAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGCCTTTGTTGGTCAGGG 1454852 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || || ||||| | | ||| Sbjct 1454851 GGAATACCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAACTGTATCATTGGCTTCA 1454792 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| | |||||| Sbjct 1454791 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAACAACTGCAT 1454742 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || ||||| || || || | || ||| Sbjct 2588169 AGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATCT 2588110 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||||||| || |||||||| || | |||||| || || || || || ||||| || ||| Sbjct 2588109 TCTAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 2588050 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||| ||||| || | ||| || || ||||| ||||| || || || ||| Sbjct 2588049 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATTGTC 2587990 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 2587989 TTGCCAGTGAGCGTCTTCACGAAGATCTGCAT 2587958 Score = 136 bits (150), Expect = 9e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 2587731 ATGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCT 2587672 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| | |||||| || || || Sbjct 2587671 GAGAGCGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGG 2587612 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || | || || || || || Sbjct 2587611 GGAATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCA 2587552 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 2587551 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || ||||| || ||| | ||||| ||| | || || Sbjct 1454482 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGCTTGCCG 1454423 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || || ||||| || || || || | || || Sbjct 1454422 GCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGGGCCTTG 1454363 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || || |||| || ||||| || || | | ||| || ||||| || Sbjct 1454362 ACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTAAGGGTC 1454303 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 1454302 TTCACAAATATCTGCAT 1454286 >seq1247 Length=1231281 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| || || || || || ||||| || || || || ||||| |||| ||| Sbjct 216473 GTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTACTGG 216414 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||||||||||||| ||||| || | || | ||| ||||| | || ||| ||||| Sbjct 216413 TTGAAGAAAAGAGGCCTCATGCCCGGCCTCACCTACTCCAACGAGCTCATCAGCCGGGAC 216354 Query 269258 GA 269259 || Sbjct 216353 GA 216352 >seq1476 Length=595132 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 ||||| |||||||||| ||||| ||||| || |||||||| || || | || |||||| Sbjct 446646 GCATTGTGGTGGTATTTCATCTCCAAAGGCATCGAATACCTGGACACGGTGTTTTTCATC 446587 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | || || || | || | | ||||| || || || || || | || ||||| Sbjct 446586 CTGAGGAAAAAGTTCAGCCAGGTCACCTTTCTGCACGTTTACCACCACTGCACCATGTTC 446527 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 || | | ||||| || || |||||| | ||||||||||| Sbjct 446526 ACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 446486 >seq283 Length=744451 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 ||||||||||| ||||| ||||| | || | ||| || || ||||||||||||| | Sbjct 90652 TGGTGGTATTACATCTCCAAAGGGGTGGAGTTCCTGGACACCGTCTTCTTCATCCTGAGG 90711 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT--TACTT 78611 ||||| || || || | || || || || || |||||||| | || ||||| | || Sbjct 90712 AAGAAGTTCAACCAGGTCAGCTTCCTCCACGTCTATCATCACTGCACCATGTTCATCCTC 90771 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||| ||||| || || || ||| || | || || |||| Sbjct 90772 TGG--TGGATCGGCATCAAGTGGGTCCCTGGTGGGCAAG 90808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150847003581916