Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq696 161 7e-35 >seq696 Length=192186 Score = 161 bits (178), Expect = 7e-35 Identities = 177/234 (76%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 |||| |||||| | ||| | ||||||||||| ||||| |||| |||||||| || || Sbjct 54117 TTCAACGGTTCCATGTGGTTGAGGTAGACGTGCGCGTCGCCCAACGTGTGGACGAAGTCG 54176 Query 25482 CCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATG 25541 ||||| | || || || | || || ||||||||||||||||| ||||||||||||| Sbjct 54177 CCCGGCTGGAGTCCCGTGATGTGCGCGATCATGTACGTGAGGAGGGCGTAGCTGGCGATG 54236 Query 25542 TTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601 || || || || || | ||||| | | || || | |||||| ||||| || || ||||| Sbjct 54237 TTGAAAGGCACGCCCAGGCCCATAT-CGCCAGAGCGCTGGTACAGCTGGCAGGACAGCTC 54295 Query 25602 TTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| |||||| ||||| |||| || | ||| ||||| || || || || Sbjct 54296 GCCGTCGCACACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGCGCCATCAG 54349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||||||| || || | | ||||||||| || ||||| || || ||||| Sbjct 54894 CATGTCGGTGTACTCTGCACCAAAGTGGCGCCACTGGAAGCCATACACGGGACCCAGGTC 54953 Query 25833 TCCATCTTCCCTGTGCTC---AAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGC 25889 || || || | |||| ||||| | ||| |||| ||| | || || || || Sbjct 54954 GCCTTCCTCAC---GCTCGGTGAAGCCGCACTTGTCCAGGAAGCTGCGCGAGCCGTTAGC 55010 Query 25890 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 25948 |||| ||||| || || ||||| || ||||| ||||| || || ||||| ||| ||| Sbjct 55011 AGCCCAAATCTTCACGCCTTTCTCCGACAGCTCCTTGGAATTCGTCGACCC-CTGTCGA 55068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339982656375021