Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1473 84.2 2e-11 >seq1473 Length=2736273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| || |||||||| |||| | | || || |||| ||||||| Sbjct 2590198 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTG-CGACCGTCTTCCAGCT 2590256 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 ||||||| | | || || | |||||| || || | | |||||||||| |||| Sbjct 2590257 GCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATTT 2590316 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | |||| | | | || || || | | ||| ||||| || ||||| || || | Sbjct 2590317 TGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAG 2590376 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| |||||||| Sbjct 2590377 TGAGGGTCTTCACAAAGATCTGCAT 2590401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421059306519377