Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1391 84.2 1e-11
seq591 84.2 1e-11
seq1490 82.4 4e-11
seq1468 82.4 4e-11
seq812 82.4 4e-11
>seq1391
Length=1459411
Score = 84.2 bits (92), Expect = 1e-11
Identities = 77/97 (79%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| || |||||| | ||||||| || ||||||| |||||||||||||
Sbjct 1261774 AAAAAAAAAAGAAGCTGGCCCGTACGGGGATCGACCCCGCGACCTTGGCGTTATTAGCAC 1261833
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT-CGACG 11536
||||||| |||||||||||||| |||| | |||||
Sbjct 1261834 CACGCTCTAACCAACTGAGCTAACCGGCCATACGACG 1261870
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1261635 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1261694
Query 11528 CC 11529
||
Sbjct 1261695 CC 1261696
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1266895 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1266954
Query 11528 CC 11529
||
Sbjct 1266955 CC 1266956
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1267060 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1267119
Query 11528 CC 11529
||
Sbjct 1267120 CC 1267121
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
||||||||||| ||||||| ||||||||||||| || |||| |||||||||||||| ||
Sbjct 1315886 GGATCGAACCTGCGACCTTGGCGTTATTAGCACCACTCTCTAACCAACTGAGCTAACCGG 1315827
Query 11528 CC 11529
||
Sbjct 1315826 CC 1315825
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1316047 GGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1315988
Query 11528 CC 11529
||
Sbjct 1315987 CC 1315986
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1316369 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1316310
Query 11528 CC 11529
||
Sbjct 1316309 CC 1316308
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1316691 GGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1316632
Query 11528 CC 11529
||
Sbjct 1316631 CC 1316630
>seq591
Length=1685148
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 1067142 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 1067083
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 1067082 CTGAGCTAACCGGCC 1067068
>seq1490
Length=8484970
Score = 82.4 bits (90), Expect = 4e-11
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| |||||||||| |||||| ||||||||||||| ||||||| ||||||
Sbjct 1498809 TGGCCCATACGGGGATCGAACCCGTGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 1498868
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 1498869 TGAGCTAACCGGCC 1498882
>seq1468
Length=937690
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1600 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1541
Query 11528 CC 11529
||
Sbjct 1540 CC 1539
>seq812
Length=3846642
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2971673 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2971732
Query 11528 CC 11529
||
Sbjct 2971733 CC 2971734
Lambda K H
0.639 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261372082341652
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |