Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq822 147 3e-30 seq782 138 2e-27 >seq822 Length=457018 Score = 147 bits (162), Expect = 3e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || |||||| || ||||| |||||||| |||||||| | |||||| Sbjct 363671 TTGACGATGTCGAAGCCCACGCGGCCCCCGAAAGTGCTGGGCTTCCAGTACTCGGGGGAG 363612 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| ||| ||||||||||||||| ||||| || |||| ||| | |||||| Sbjct 363611 CAGATGGGGTTGCCCAGGAGGCCTTTGAGGGAGAACGGCGCACCCATCTCCACCATGCTC 363552 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || |||||||||||| |||| | | | |||| || | |||| ||| || || | | Sbjct 363551 TCGCCGAAGATGGCGCCCAGACGAGTCCTCTCCAGCAGCATGCCGGGGTAAAATTCAAGA 363492 Query 8921 GCCTCGATGTCTCCGTAAA 8939 || || ||||| ||||||| Sbjct 363491 GCGTCAATGTCGCCGTAAA 363473 >seq782 Length=5188642 Score = 138 bits (152), Expect = 2e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 |||||||| | |||||||| ||| ||||||| ||| | ||||| || | |||| Sbjct 4107976 ATGAGTCGCGAAGTCTGAAAGAGTCTTTCGTCATCCCAATAAGGATGGACTTGCTTCAAG 4108035 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 |||| |||||||| |||||||||| |||||| || || || ||||||||||||||||| Sbjct 4108036 ACATTGCACACTCGATTGTGTTCCCGGAGCCAAATGGTGGCATACATCATGAGACCAGGG 4108095 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||||||||||||||| || || ||||| Sbjct 4108096 ACCAGGCCAAAAGCCTCATGGCCCACAGC 4108124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708193768356880