Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1473 132 4e-26 >seq1473 Length=2736273 Score = 132 bits (146), Expect = 4e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| ||||| || |||| || || || ||||| || |||||||| |||||||| Sbjct 1452845 ATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGAATGCCTTCTTT 1452786 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||||| | ||||||||| || || || |||| ||||| Sbjct 1452785 GTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACCTCAAGGGTGAT 1452726 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| ||||| || || ||||||||||||||||||| Sbjct 1452725 GGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGC 1452688 Score = 122 bits (134), Expect = 8e-23 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| |||| || | || | ||||| ||||||||| | ||| || || Sbjct 1454740 CCACCTCTCAAACGCAGGACAAGATGAAGAGTAGCTTCCTTTTGGATGTTGTAGTCAG-- 1454683 Query 94841 ATAGTGTTGGA----ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || || || |||| ||||||||| || ||||||| | || || |||| || Sbjct 1454682 AGAGGGTGCGATCACATCC--CAGCTGTTTGCCAGCAAAGATCAGCCTCTGGTGATGAGG 1454625 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||||||||| ||||| | ||||| || ||||| | ||||| ||| | || Sbjct 1454624 CGGAATACCTTCCTTGTCTTTGATTTTGGCTTTGACATTCTCAACAGTATCACTGCCCTC 1454565 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| |||| ||||| || || ||||| || |||||||||||||||||||||| Sbjct 1454564 GACCTCAAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATGC 1454512 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || ||||||| || ||||||||||| |||||||||||||| || Sbjct 1452389 ATCTTCCAACTGTTTGCCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATACCTTCCTT 1452330 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || || || | ||||||||| | || || |||| ||||| Sbjct 1452329 GTCCTGGATTTTGGCTTTAACATTCTCAACAGTGTCACTGCCTTCAACCTCAAGGGTGAT 1452270 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||||||||| ||||| Sbjct 1452269 GGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 1452234 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || || | |||| | ||| ||||| ||||| || Sbjct 1454026 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGTTTGCCA 1453967 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || || || || || || |||||||| ||||| ||||| | ||||| ||||| Sbjct 1453966 GCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 1453907 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | ||||||||| || || |||| |||||||| || |||||||| ||| Sbjct 1453906 ACATTCTCAACAGTGTCACTTCCCTCAACTTCAAGGGTGATGGTCTTGCCAGTAAGGGTT 1453847 Query 94991 TTCACAAAGATCTGCATGC 95009 |||||||| |||||||||| Sbjct 1453846 TTCACAAATATCTGCATGC 1453828 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || |||| || || || ||||| ||||| ||||| ||||| || Sbjct 2587657 ATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 2587598 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || ||||| | | ||||||| | | || || || | ||||| Sbjct 2587597 GTCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGAT 2587538 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 ||| || ||||| || || |||||||||||||||||| ||||| Sbjct 2587537 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTTACA 2587495 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| || || ||||| || || ||||| ||||| ||| Sbjct 2590247 TCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGAATGCCTTCCTTG 2590306 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || ||||| | | ||||||| | | || || || | |||||| Sbjct 2590307 TCCTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATG 2590366 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 || || ||||| || || |||||||||||||||||| ||||| Sbjct 2590367 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTTACA 2590408 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||| || ||||| || | ||| || || | ||||||| | ||| || Sbjct 2587937 CAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC--TGATAGTGTACGGCCATCTTC 2587880 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| || || ||||| ||||| ||||| ||||| ||||| | Sbjct 2587879 TAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 2587820 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || ||||| ||| |||||| | | || || |||| || ||||| || Sbjct 2587819 GATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTTATGGTCTT 2587760 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || ||||| ||||||||||||| Sbjct 2587759 GCCAGTGAGGGTCTTCACGAAGATCTGCATGC 2587728 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| || || |||||||| || ||||| ||||| ||||| | ||||| ||||| | Sbjct 1454193 CAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCA 1454134 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | ||||||||| | ||||| |||| |||||||| || ||||| || || | Sbjct 1454133 CATTCTCAACAGTGTCACTGCCCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 1454074 Query 94992 TCACAAAGATCTGCATGC 95009 | |||||||||||||||| Sbjct 1454073 TTACAAAGATCTGCATGC 1454056 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || ||||| || | || | || || ||||| || | Sbjct 1453385 AAATATTTGCATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAAT 1453326 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | ||| | ||| ||||| ||||| || |||| || || || || Sbjct 1453325 GTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTG 1453266 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || |||||||| ||||||||||| | ||||| ||||| || | || ||||| Sbjct 1453265 TTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTC 1453206 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||| ||| || ||||| || || || |||||||||||||| Sbjct 1453205 ACTCCCCTCAACCTCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146 Query 95008 GC 95009 || Sbjct 1453145 GC 1453144 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || ||||| || | || | || || ||||| || | Sbjct 1453613 AAATATTTGCATGCCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGAT 1453554 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | ||| | ||| || || ||||| || |||| || || || || Sbjct 1453553 GTTGTAGTCAGAGAGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTG 1453494 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || |||||||| ||||||||||| | |||||| |||| || | |||||||| Sbjct 1453493 TTGGTCAGGAGGAATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTC 1453434 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || | ||||| ||||| ||||| || || |||||||| || ||||| Sbjct 1453433 ACTGTCCTCAACCTCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374 Query 95008 GC 95009 || Sbjct 1453373 GC 1453372 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||| |||||||| | ||| ||||| | || | ||| || ||||| ||||| Sbjct 1454938 GTAGCCTCCTTTTGGATGTTGTAATCAGAGAGGGTACGGCCATCTTCTAGCTGCTTTCCA 1454879 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | ||||| || || || ||||||||||| ||||| | ||||| |||||| Sbjct 1454878 GCAAAGATCAGCCTTTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGGATTTTAGCCTTG 1454819 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | || || ||| | || || |||| |||||||| || ||||| || || Sbjct 1454818 ACATTCTCAACTGTATCATTGGCTTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 1454759 Query 94991 TTCACAAAGATCTGCATGC 95009 |||||||| | |||||||| Sbjct 1454758 TTCACAAACAACTGCATGC 1454740 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || || || ||| | ||| || || || || || Sbjct 2588154 GTGGACTCCTTTTGGATGTTGTAGTCTGACAGTGTGCGGCCATCTTCTAGTTGCTTGCCA 2588095 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||| ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 2588094 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTG 2588035 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || |||| ||||| || || ||||| || || Sbjct 2588034 ACATTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGCGTC 2587975 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 2587974 TTCACGAAGATCTGCATGC 2587956 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| ||||| || |||| || || || || || || |||||||| |||||||| Sbjct 1453073 ATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTT 1453014 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | || |||||| || || |||| |||| Sbjct 1453013 GTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACCTCAAGAGTGAC 1452954 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || || |||||||||||||||| Sbjct 1452953 GGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCATGC 1452916 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| ||||| || |||| || || || || || || |||||||| |||||||| Sbjct 1453757 ATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATGCCTTCTTT 1453698 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| ||||| ||| | ||||| ||| || || |||| |||| Sbjct 1453697 GTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACCTCAAGAGTGAC 1453638 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || |||||||| || ||||||| Sbjct 1453637 AGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCATGC 1453600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448081752747720