Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1014 185 1e-42 seq65 161 2e-35 seq1140 158 2e-34 seq1339 154 2e-33 seq312 149 1e-31 seq64 141 1e-29 seq37080 138 2e-28 >seq1014 Length=613510 Score = 185 bits (204), Expect = 1e-42 Identities = 203/270 (75%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||| || |||||||||||||| || || || || |||||| Sbjct 138678 GCCAAGCGTCATCGCAAAGTTCTCCGTGATAACATCCAAGGTATTACAAAACCCGCTATC 138737 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||| || ||||||||||| | || || || |||| || |||| Sbjct 138738 CGTCGCCTTGCTCGTCGCGGAGGAGTCAAGCGAATTTCGGGCCTGATCTACGAGGAGACA 138797 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| ||||| | ||| ||| |||| |||||| || ||| |||||| Sbjct 138798 CGTGGCGTGCTGAAGGTCTTCTTGGAGAACGTCATCCGCGATGCTGTCACCTACACCGAG 138857 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||| |||||| ||||||| | || ||||| |||| | || || Sbjct 138858 CACGCTAAGAGGAAGACGGTCACCGCCATGGACGTGGTGTATGCTCTGAAGAGACAGGGA 138917 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || ||||| ||||| || Sbjct 138918 CGTACTCTCTACGGCTTTGGCGGTTAAACT 138947 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||| || || || ||||| || ||||||||||| || || Sbjct 130787 CGCCAAGCGTCATCGCAAAGTTCTCCGCGACAATATCCAGGGTATCACCAAGCCCGCCAT 130846 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||||||| || ||||||||||| ||||||| | |||| || |||| Sbjct 130847 CCGTCGCCTGGCTCGTCGCGGCGGAGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 130906 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || ||| || || ||||| Sbjct 130907 CCGAGGCGTGCTTAAGGTCTTCCTAGAGAACGTCATCCGAGACGCTGTCACGTACACCGA 130966 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | |||||||| || |||||||| | || || || |||| | ||||| Sbjct 130967 GCATGCCAAGAGGAAGACTGTGACTGCCATGGATGTGGTGTACGCTCTGAAGAGACAAGG 131026 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 131027 ACGTACCCTCTACGGATTCGGCGGTTAA 131054 >seq65 Length=236171 Score = 161 bits (178), Expect = 2e-35 Identities = 199/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | ||| || || |||||||| || |||||||| || || || Sbjct 162848 CGCAAAGCGTCACCGCAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAACCCGCAAT 162907 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||||||||||| || || |||||||||||| |||| || || |||| || |||| Sbjct 162908 TAGACGTCTGGCTCGACGCGGCGGAGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 162967 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 162968 CCGCGGTGTCCTCAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACTTACACCGA 163027 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| |||||||| | || || || | ||| | || || Sbjct 163028 GCACGCCAAGAGGAAGACAGTCACGGCCATGGATGTGGTGTACGCTCTCAAAAGGCAGGG 163087 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | ||||| || || ||||| ||| Sbjct 163088 CCGCACCCTGTATGGCTTCGGCGGTTAAGCTT 163119 >seq1140 Length=412969 Score = 158 bits (174), Expect = 2e-34 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | ||| || || |||||||| || ||||||||||| || || Sbjct 409202 CGCTAAGCGTCACCGTAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 409261 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || || || |||||||||||| |||| || | |||| || |||| Sbjct 409262 CCGTCGTCTGGCACGCCGCGGAGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 409321 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||| | ||| ||| |||| ||||||| | ||| ||||| Sbjct 409322 CCGCGGCGTGCTCAAGGTCTTCTTGGAGAACGTCATCCGTGATGCTGTTACCTACACCGA 409381 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | || || |||||| | |||||| | || ||||| | || | ||||| Sbjct 409382 GCACGCCAAGAGAAAAACCGTCACCGCTATGGATGTGGTGTATGCTCTCAAGAGACAAGG 409441 Query 16672 CCGTA 16676 |||| Sbjct 409442 ACGTA 409446 >seq1339 Length=61840 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| || || |||||||| || ||||||||||| || ||| Sbjct 61223 GCCAAGCGTCACCGTAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCATC 61282 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || || |||||||||||| |||| || | |||| || |||| Sbjct 61283 CGTCGTCTGGCACGCCGCGGAGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGACC 61342 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| ||||| | ||| ||| |||| ||| ||| || ||| |||||| Sbjct 61343 CGTGGCGTACTCAAGGTCTTCTTGGAGAACGTCATCCGTGACGCTGTCACCTACACCGAG 61402 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| | ||||| | || || || | || | ||||| Sbjct 61403 CACGCCAAGAGAAAGACCGTCACCGCTATGGACGTGGTGTACGCGCTCAAGAGACAAGGG 61462 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||| || || Sbjct 61463 CGTACTCTCTATGGATTCGG 61482 >seq312 Length=2238381 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| || || |||||||| || ||||||||||| || ||| Sbjct 803257 GCGAAGCGTCACCGCAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCATC 803198 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| || ||||| |||||||| |||| ||| | |||| || |||| Sbjct 803197 CGCCGTCTGGCTCGCCGCGGTGGGGTCAAGCGAATCTCCGGACTCATCTACGAGGAGACG 803138 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || | ||||| ||| ||| || | ||| || || ||| |||||| Sbjct 803137 CGCGGTGTGCTCAAAGTTTTCCTGGAGAACGTCATACGTGACGCCGTCACCTACACCGAG 803078 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || |||||||| | || || || | || | ||||| Sbjct 803077 CACGCGAAAAGGAAGACCGTGACTGCCATGGATGTGGTGTACGCTCTCAAGAGACAAGGG 803018 Query 16673 CG 16674 || Sbjct 803017 CG 803016 Score = 149 bits (164), Expect = 1e-31 Identities = 193/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| | ||||| || |||||||| ||||| |||||||| || || Sbjct 805316 GCTAAGCGTCACCGCAAAGTCCTTCGTGACAACATCCAGGGAATTACCAAGCCCGCCATT 805257 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| ||||| ||||| || || | || ||| | |||| || |||| Sbjct 805256 CGCCGTCTCGCTCGCCGTGGCGGAGTAAAACGGATTTCGGGACTCATCTACGAGGAGACC 805197 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| ||||| | ||| || |||| |||||| || ||||||||| Sbjct 805196 CGCGGTGTACTCAAGGTCTTCTTGGAGAATGTGATCCGTGATGCAGTCACATATACCGAG 805137 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || | |||||| | || || || | ||| | ||||| Sbjct 805136 CACGCCAAAAGAAAGACCGTTACTGCGATGGATGTGGTGTACGCTCTCAAAAGACAAGGA 805077 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| || || ||||| Sbjct 805076 CGCACTCTCTATGGCTTCGGCGGTTAA 805050 >seq64 Length=229379 Score = 141 bits (156), Expect = 1e-29 Identities = 192/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || || |||| | ||||| || ||||||||||| |||||||| || || || Sbjct 107425 GCTAAACGCCACCGCAAAGTCCTTCGGGACAACATCCAAGGCATCACCAAACCCGCAATT 107366 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||| || ||||| || ||| | || || | | || ||||||| Sbjct 107365 CGGCGTTTGGCTCGTCGCGGCGGAGTGAAACGTATTTCCGGTCTTATTTACGAAGAGACC 107306 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | || | ||||| ||| |||||| | ||| || || ||| || ||| Sbjct 107305 CGGGGTGTGCTTAAAGTGTTCCTGGAGAACGTTATTCGTGACGCAGTCACCTACACTGAG 107246 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || ||| |||||||| | || || || |||| | || || Sbjct 107245 CACGCCAAGAGGAAGACCGTTACCGCCATGGATGTAGTGTACGCCCTGAAGAGGCAGGGG 107186 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| ||||||| || || |||||| Sbjct 107185 CGTACTCTTTATGGCTTCGGTGGTTAAT 107158 Score = 125 bits (138), Expect = 1e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| || ||||| || || ||||| |||||||||||| Sbjct 98975 GCAAAGCGTCACCGTAAGGTTCTTCGTGACAACATTCAGGGCATCACTAAGCCAGCTATC 99034 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| || |||||| |||| || | |||| || |||| | Sbjct 99035 CGCCGTCTGGCTCGCCGTGGTGGGGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACT 99094 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| |||||| | | ||| | || || || | ||| || || Sbjct 99095 CGCGGGGTCCTCAAGGACTTCCTTGAAAACGTCAGCCGCGACGCCGTAACCTACACGGAA 99154 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 || || || | ||||| || ||| | |||||| |||| ||||| Sbjct 99155 CATGCCAAGAGGAAGACGGTGACCGCTATGGATGTCGTGTATGC 99198 >seq37080 Length=1685 Score = 138 bits (152), Expect = 2e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| || ||||| || || ||||| |||||||||||| Sbjct 347 GCAAAGCGTCACCGTAAGGTTCTTCGTGACAACATTCAGGGCATCACTAAGCCAGCTATC 288 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| || |||||| |||| || | |||| || |||| | Sbjct 287 CGCCGTCTGGCTCGCCGTGGTGGGGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACT 228 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| ||||||| | | ||| |||| || || | ||| || || Sbjct 227 CGCGGTGTCCTCAAGGTCTTCCTTGAAAACGTCATCCGCGACGCCGTAACCTACACGGAA 168 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 || || || | ||||| || ||| | |||||| |||| ||||| Sbjct 167 CATGCCAAGAGGAAGACGGTGACCGCTATGGATGTCGTGTATGC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041025947261