Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1014 185 1e-42
seq65 161 2e-35
seq1140 158 2e-34
seq1339 154 2e-33
seq312 149 1e-31
seq64 141 1e-29
seq37080 138 2e-28
>seq1014
Length=613510
Score = 185 bits (204), Expect = 1e-42
Identities = 203/270 (75%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||||| | ||| || |||||||||||||| || || || || ||||||
Sbjct 138678 GCCAAGCGTCATCGCAAAGTTCTCCGTGATAACATCCAAGGTATTACAAAACCCGCTATC 138737
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| || |||||||| || ||||||||||| | || || || |||| || ||||
Sbjct 138738 CGTCGCCTTGCTCGTCGCGGAGGAGTCAAGCGAATTTCGGGCCTGATCTACGAGGAGACA 138797
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| ||||| | ||| ||| |||| |||||| || ||| ||||||
Sbjct 138798 CGTGGCGTGCTGAAGGTCTTCTTGGAGAACGTCATCCGCGATGCTGTCACCTACACCGAG 138857
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| | ||||| |||||| ||||||| | || ||||| |||| | || ||
Sbjct 138858 CACGCTAAGAGGAAGACGGTCACCGCCATGGACGTGGTGTATGCTCTGAAGAGACAGGGA 138917
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|||| | || || ||||| ||||| ||
Sbjct 138918 CGTACTCTCTACGGCTTTGGCGGTTAAACT 138947
Score = 163 bits (180), Expect = 4e-36
Identities = 197/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | ||| || || || ||||| || ||||||||||| || ||
Sbjct 130787 CGCCAAGCGTCATCGCAAAGTTCTCCGCGACAATATCCAGGGTATCACCAAGCCCGCCAT 130846
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| ||||||||||| || ||||||||||| ||||||| | |||| || ||||
Sbjct 130847 CCGTCGCCTGGCTCGTCGCGGCGGAGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 130906
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || ||| || || |||||
Sbjct 130907 CCGAGGCGTGCTTAAGGTCTTCCTAGAGAACGTCATCCGAGACGCTGTCACGTACACCGA 130966
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || | |||||||| || |||||||| | || || || |||| | |||||
Sbjct 130967 GCATGCCAAGAGGAAGACTGTGACTGCCATGGATGTGGTGTACGCTCTGAAGAGACAAGG 131026
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || || || || |||||
Sbjct 131027 ACGTACCCTCTACGGATTCGGCGGTTAA 131054
>seq65
Length=236171
Score = 161 bits (178), Expect = 2e-35
Identities = 199/272 (73%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| | ||| || || |||||||| || |||||||| || || ||
Sbjct 162848 CGCAAAGCGTCACCGCAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAACCCGCAAT 162907
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| ||||||||||| || || |||||||||||| |||| || || |||| || ||||
Sbjct 162908 TAGACGTCTGGCTCGACGCGGCGGAGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 162967
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| ||| || || || |||||
Sbjct 162968 CCGCGGTGTCCTCAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACTTACACCGA 163027
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| |||||||| | || || || | ||| | || ||
Sbjct 163028 GCACGCCAAGAGGAAGACAGTCACGGCCATGGATGTGGTGTACGCTCTCAAAAGGCAGGG 163087
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
||| | | ||||| || || ||||| |||
Sbjct 163088 CCGCACCCTGTATGGCTTCGGCGGTTAAGCTT 163119
>seq1140
Length=412969
Score = 158 bits (174), Expect = 2e-34
Identities = 182/245 (74%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | ||| || || |||||||| || ||||||||||| || ||
Sbjct 409202 CGCTAAGCGTCACCGTAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 409261
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||| || || || |||||||||||| |||| || | |||| || ||||
Sbjct 409262 CCGTCGTCTGGCACGCCGCGGAGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 409321
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||| | ||| ||| |||| ||||||| | ||| |||||
Sbjct 409322 CCGCGGCGTGCTCAAGGTCTTCTTGGAGAACGTCATCCGTGATGCTGTTACCTACACCGA 409381
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | || || |||||| | |||||| | || ||||| | || | |||||
Sbjct 409382 GCACGCCAAGAGAAAAACCGTCACCGCTATGGATGTGGTGTATGCTCTCAAGAGACAAGG 409441
Query 16672 CCGTA 16676
||||
Sbjct 409442 ACGTA 409446
>seq1339
Length=61840
Score = 154 bits (170), Expect = 2e-33
Identities = 190/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | ||| || || |||||||| || ||||||||||| || |||
Sbjct 61223 GCCAAGCGTCACCGTAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCCATC 61282
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| || || || |||||||||||| |||| || | |||| || ||||
Sbjct 61283 CGTCGTCTGGCACGCCGCGGAGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGACC 61342
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | ||| ||||| | ||| ||| |||| ||| ||| || ||| ||||||
Sbjct 61343 CGTGGCGTACTCAAGGTCTTCTTGGAGAACGTCATCCGTGACGCTGTCACCTACACCGAG 61402
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| | ||||| | || || || | || | |||||
Sbjct 61403 CACGCCAAGAGAAAGACCGTCACCGCTATGGACGTGGTGTACGCGCTCAAGAGACAAGGG 61462
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| | ||||| || ||
Sbjct 61463 CGTACTCTCTATGGATTCGG 61482
>seq312
Length=2238381
Score = 149 bits (164), Expect = 1e-31
Identities = 178/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| |||| | ||| || || |||||||| || ||||||||||| || |||
Sbjct 803257 GCGAAGCGTCACCGCAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCATC 803198
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||||||||| || ||||| |||||||| |||| ||| | |||| || ||||
Sbjct 803197 CGCCGTCTGGCTCGCCGCGGTGGGGTCAAGCGAATCTCCGGACTCATCTACGAGGAGACG 803138
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | || | ||||| ||| ||| || | ||| || || ||| ||||||
Sbjct 803137 CGCGGTGTGCTCAAAGTTTTCCTGGAGAACGTCATACGTGACGCCGTCACCTACACCGAG 803078
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||| | ||||| || || |||||||| | || || || | || | |||||
Sbjct 803077 CACGCGAAAAGGAAGACCGTGACTGCCATGGATGTGGTGTACGCTCTCAAGAGACAAGGG 803018
Query 16673 CG 16674
||
Sbjct 803017 CG 803016
Score = 149 bits (164), Expect = 1e-31
Identities = 193/267 (72%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| |||| | ||||| || |||||||| ||||| |||||||| || ||
Sbjct 805316 GCTAAGCGTCACCGCAAAGTCCTTCGTGACAACATCCAGGGAATTACCAAGCCCGCCATT 805257
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| ||||| ||||| || || | || ||| | |||| || ||||
Sbjct 805256 CGCCGTCTCGCTCGCCGTGGCGGAGTAAAACGGATTTCGGGACTCATCTACGAGGAGACC 805197
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | ||| ||||| | ||| || |||| |||||| || |||||||||
Sbjct 805196 CGCGGTGTACTCAAGGTCTTCTTGGAGAATGTGATCCGTGATGCAGTCACATATACCGAG 805137
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||| | ||||| || || | |||||| | || || || | ||| | |||||
Sbjct 805136 CACGCCAAAAGAAAGACCGTTACTGCGATGGATGTGGTGTACGCTCTCAAAAGACAAGGA 805077
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | ||||| || || |||||
Sbjct 805076 CGCACTCTCTATGGCTTCGGCGGTTAA 805050
>seq64
Length=229379
Score = 141 bits (156), Expect = 1e-29
Identities = 192/268 (72%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| || || |||| | ||||| || ||||||||||| |||||||| || || ||
Sbjct 107425 GCTAAACGCCACCGCAAAGTCCTTCGGGACAACATCCAAGGCATCACCAAACCCGCAATT 107366
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||||| || ||||| || ||| | || || | | || |||||||
Sbjct 107365 CGGCGTTTGGCTCGTCGCGGCGGAGTGAAACGTATTTCCGGTCTTATTTACGAAGAGACC 107306
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | || | ||||| ||| |||||| | ||| || || ||| || |||
Sbjct 107305 CGGGGTGTGCTTAAAGTGTTCCTGGAGAACGTTATTCGTGACGCAGTCACCTACACTGAG 107246
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| || ||| |||||||| | || || || |||| | || ||
Sbjct 107245 CACGCCAAGAGGAAGACCGTTACCGCCATGGATGTAGTGTACGCCCTGAAGAGGCAGGGG 107186
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|||| ||||||| || || ||||||
Sbjct 107185 CGTACTCTTTATGGCTTCGGTGGTTAAT 107158
Score = 125 bits (138), Expect = 1e-24
Identities = 162/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | |||||| || ||||| || || ||||| ||||||||||||
Sbjct 98975 GCAAAGCGTCACCGTAAGGTTCTTCGTGACAACATTCAGGGCATCACTAAGCCAGCTATC 99034
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||||||||| |||||||| || |||||| |||| || | |||| || |||| |
Sbjct 99035 CGCCGTCTGGCTCGCCGTGGTGGGGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACT 99094
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | ||| |||||| | | ||| | || || || | ||| || ||
Sbjct 99095 CGCGGGGTCCTCAAGGACTTCCTTGAAAACGTCAGCCGCGACGCCGTAACCTACACGGAA 99154
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|| || || | ||||| || ||| | |||||| |||| |||||
Sbjct 99155 CATGCCAAGAGGAAGACGGTGACCGCTATGGATGTCGTGTATGC 99198
>seq37080
Length=1685
Score = 138 bits (152), Expect = 2e-28
Identities = 165/224 (74%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | |||||| || ||||| || || ||||| ||||||||||||
Sbjct 347 GCAAAGCGTCACCGTAAGGTTCTTCGTGACAACATTCAGGGCATCACTAAGCCAGCTATC 288
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||||||||| |||||||| || |||||| |||| || | |||| || |||| |
Sbjct 287 CGCCGTCTGGCTCGCCGTGGTGGGGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACT 228
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | ||| ||||||| | | ||| |||| || || | ||| || ||
Sbjct 227 CGCGGTGTCCTCAAGGTCTTCCTTGAAAACGTCATCCGCGACGCCGTAACCTACACGGAA 168
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|| || || | ||||| || ||| | |||||| |||| |||||
Sbjct 167 CATGCCAAGAGGAAGACGGTGACCGCTATGGATGTCGTGTATGC 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79041025947261
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