Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 385 6e-102
seq28210 116 5e-21
seq354 105 8e-18
seq1486 102 1e-16
>seq1148
Length=2189075
Score = 385 bits (426), Expect = 6e-102
Identities = 1069/1634 (65%), Gaps = 9/1634 (1%)
Strand=Plus/Plus
Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636
|| || ||||| || || | || | || || || || || ||||| | || ||||
Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393
Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696
|| | || |||||||||| |||| || ||| || || |||| ||||| || |
Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453
Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756
| |||||| || ||||| || | || || || || || || || || | || | |
Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513
Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816
| || ||| | || || || | || || || || || || || || | |||||
Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573
Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCT 62873
|| |||| || |||||| || || ||| || || || || ||| |
Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633
Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62931
| || ||||||| | || || || || || || || ||||| ||||| | | ||
Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693
Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991
| |||| | ||||| ||||| || || || |||||||| || || | || || |
Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751
Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051
| || ||||| || || |||||||| || || ||| | || || || || || |||
Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811
Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111
|||| || || || || | ||| || | || || | | ||| | | |
Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCT 533871
Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171
| | || || |||| ||||| || ||||| || ||||| | ||||| ||||
Sbjct 533872 CCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCCAG 533931
Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231
| || |||| |||||||| | |||||| || || || || | ||||| || |
Sbjct 533932 GGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACA 533991
Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291
|||| || ||||| ||| | | || || || | || | || ||||| || ||||| |
Sbjct 533992 GATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGT 534051
Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351
|||| || || || ||||| | | || ||| | |||||||| |||| ||| ||||| |
Sbjct 534052 TCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGA 534111
Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411
| || ||||| ||||| |||||||| || | ||| | || ||||| || || || |
Sbjct 534112 AGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACAC 534171
Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471
|| ||| || | | ||||| || | |||||||| |||| ||| ||||| ||| |||
Sbjct 534172 GCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGG 534231
Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531
||| || || | | | || || || |||||| ||| ||||| | || ||
Sbjct 534232 AACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACT 534291
Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591
| || | |||||| ||||| || || ||||| || || ||||| || || || ||||
Sbjct 534292 GCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGC 534351
Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651
| |||| || | || | || || || || || | || || || |||||||| ||||
Sbjct 534352 TGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACC 534411
Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63711
|| | || ||||| || |||||||||||||| || | || | | || || |
Sbjct 534412 ATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGC 534471
Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771
| || || || ||||| | ||||||||| || | || | | |||| ||| || || |
Sbjct 534472 CCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGA 534531
Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831
|| ||||| |||| || || || ||||| | ||||| || ||||| || ||||
Sbjct 534532 GCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGT 534591
Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT- 63890
| || || ||||||| || ||||| | | || || |||| || | |||
Sbjct 534592 AGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCTTG 534650
Query 63891 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 63950
|| || || || ||||| | ||| || || || |||||||| | ||||||||
Sbjct 534651 GAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCATG 534710
Query 63951 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 64010
|| || || || | || || || |||||||| || || || || || || | || ||
Sbjct 534711 ACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGCC 534770
Query 64011 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 64070
| |||||||| || || || | || || ||||| || || ||||| ||||| ||
Sbjct 534771 AAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGTA 534830
Query 64071 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTA 64130
|||| || ||||| || || ||| | || | || || || |||||||| | || | |
Sbjct 534831 TCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCTGA 534890
Query 64131 ATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATT 64190
|| || | |||| ||| | |||||| || | || || || || ||||||
Sbjct 534891 GCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGATT 534950
Query 64191 TTATCAAACATGAC 64204
||||| ||||||||
Sbjct 534951 TTATCGAACATGAC 534964
>seq28210
Length=470
Score = 116 bits (128), Expect = 5e-21
Identities = 257/377 (68%), Gaps = 15/377 (4%)
Strand=Plus/Minus
Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609
|| ||||| || ||| || ||||| ||||| |||| ||| ||| |||| ||||||
Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405
Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC- 33668
||||| || || || ||||| || |||||| | | || || | | || || ||
Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345
Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728
| |||||||| | | ||||||||||| ||||| || || ||| || || ||||||||
Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286
Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCATTGAT 33785
||| | ||| ||||| ||||| |||||| | || | | |||||||| |
Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226
Query 33786 ATCTT----TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841
||||| ||| | ||||| ||||| || |||||||| | ||||| |||||||
Sbjct 225 ATCTTGGTGTAGGTCTATCT-CTTCTGCC---GTCCAAAAACAAGCCTCACATTTTTTAT 170
Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT-TTGGATTTGGT 33900
|| | ||| | || | | ||| || || ||||| || |||| | || | ||| |
Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110
Query 33901 GCAAGGATGGGTTCCAT 33917
|||| || || |||||
Sbjct 109 GCAA-AATAGGCTCCAT 94
>seq354
Length=3526367
Score = 105 bits (116), Expect = 8e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
|| || || || |||| || || || |||||||| |||||||| || || ||||| |||
Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483
Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731
|| ||||||||||| | || ||||| | || ||||| || || || || | ||||| |
Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543
Query 63732 ATGTGCTGAGGTCTTTCA 63749
|||||||| ||||| |||
Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561
Score = 105 bits (116), Expect = 8e-18
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
|| || || || |||| || || || |||||||| |||||||| || || ||||| |||
Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916
Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731
|| ||||||||||| | || ||||| | || ||||| || || || || | ||||| |
Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976
Query 63732 ATGTGCTGAGGTCTTTCA 63749
|||||||| ||||| |||
Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
|||| || | ||| || ||||||||||| || || || ||||| || | || || || |
Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
|||| || || ||||||| ||||| || || || | || || |||||||||||||
Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297
Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120
|| || || |||| || ||||| | || || || ||||||||
Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| |||||||| || || | ||||| || ||||| ||||| ||||| || | || |
Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||| || | || |||||||| || || || ||||| || |||| | |||
Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170
Query 62457 CTATTTCTAAGACCGT 62472
|| ||||||| ||||
Sbjct 777171 CTGTTTCTAACGCCGT 777186
>seq1486
Length=661795
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || |||||||||||||| ||||| || || |
Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || |||| ||||| || || || |||||||| || || || || || || |
Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474
Query 33446 C 33446
|
Sbjct 352473 C 352473
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || |||||||||||||| ||||| || || |
Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || |||| ||||| || || || |||||||| || || || || || || |
Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418
Query 33446 C 33446
|
Sbjct 357419 C 357419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622656151281320
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