Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1148 385 6e-102 seq28210 116 5e-21 seq354 105 8e-18 seq1486 102 1e-16 >seq1148 Length=2189075 Score = 385 bits (426), Expect = 6e-102 Identities = 1069/1634 (65%), Gaps = 9/1634 (1%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || || | || | || || || || || ||||| | || |||| Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || | || |||||||||| |||| || ||| || || |||| ||||| || | Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | |||||| || ||||| || | || || || || || || || || | || | | Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 | || ||| | || || || | || || || || || || || || | ||||| Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCT 62873 || |||| || |||||| || || ||| || || || || ||| | Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62931 | || ||||||| | || || || || || || || ||||| ||||| | | || Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | |||| | ||||| ||||| || || || |||||||| || || | || || | Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 | || ||||| || || |||||||| || || ||| | || || || || || ||| Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111 |||| || || || || | ||| || | || || | | ||| | | | Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGACCCGGCCCT 533871 Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171 | | || || |||| ||||| || ||||| || ||||| | ||||| |||| Sbjct 533872 CCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCCAG 533931 Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231 | || |||| |||||||| | |||||| || || || || | ||||| || | Sbjct 533932 GGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAACA 533991 Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 |||| || ||||| ||| | | || || || | || | || ||||| || ||||| | Sbjct 533992 GATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGTGT 534051 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351 |||| || || || ||||| | | || ||| | |||||||| |||| ||| ||||| | Sbjct 534052 TCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGA 534111 Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | || ||||| ||||| |||||||| || | ||| | || ||||| || || || | Sbjct 534112 AGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACAC 534171 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 || ||| || | | ||||| || | |||||||| |||| ||| ||||| ||| ||| Sbjct 534172 GCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGG 534231 Query 63472 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 ||| || || | | | || || || |||||| ||| ||||| | || || Sbjct 534232 AACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACT 534291 Query 63532 GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63591 | || | |||||| ||||| || || ||||| || || ||||| || || || |||| Sbjct 534292 GCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCAGC 534351 Query 63592 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63651 | |||| || | || | || || || || || | || || || |||||||| |||| Sbjct 534352 TGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAACC 534411 Query 63652 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63711 || | || ||||| || |||||||||||||| || | || | | || || | Sbjct 534412 ATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGATGC 534471 Query 63712 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA 63771 | || || || ||||| | ||||||||| || | || | | |||| ||| || || | Sbjct 534472 CCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGA 534531 Query 63772 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 || ||||| |||| || || || ||||| | ||||| || ||||| || |||| Sbjct 534532 GCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTCGT 534591 Query 63832 AAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT- 63890 | || || ||||||| || ||||| | | || || |||| || | ||| Sbjct 534592 AGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCTTG 534650 Query 63891 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 63950 || || || || ||||| | ||| || || || |||||||| | |||||||| Sbjct 534651 GAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCATG 534710 Query 63951 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 64010 || || || || | || || || |||||||| || || || || || || | || || Sbjct 534711 ACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTGCC 534770 Query 64011 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 64070 | |||||||| || || || | || || ||||| || || ||||| ||||| || Sbjct 534771 AAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCGTA 534830 Query 64071 TCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTA 64130 |||| || ||||| || || ||| | || | || || || |||||||| | || | | Sbjct 534831 TCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCTGA 534890 Query 64131 ATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATT 64190 || || | |||| ||| | |||||| || | || || || || |||||| Sbjct 534891 GCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGATT 534950 Query 64191 TTATCAAACATGAC 64204 ||||| |||||||| Sbjct 534951 TTATCGAACATGAC 534964 >seq28210 Length=470 Score = 116 bits (128), Expect = 5e-21 Identities = 257/377 (68%), Gaps = 15/377 (4%) Strand=Plus/Minus Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 || ||||| || ||| || ||||| ||||| |||| ||| ||| |||| |||||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC- 33668 ||||| || || || ||||| || |||||| | | || || | | || || || Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | |||||||| | | ||||||||||| ||||| || || ||| || || |||||||| Sbjct 344 TTTACAAAATTCT-CAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCATTGAT 33785 ||| | ||| ||||| ||||| |||||| | || | | |||||||| | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 33786 ATCTT----TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 ||||| ||| | ||||| ||||| || |||||||| | ||||| ||||||| Sbjct 225 ATCTTGGTGTAGGTCTATCT-CTTCTGCC---GTCCAAAAACAAGCCTCACATTTTTTAT 170 Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT-TTGGATTTGGT 33900 || | ||| | || | | ||| || || ||||| || |||| | || | ||| | Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110 Query 33901 GCAAGGATGGGTTCCAT 33917 |||| || || ||||| Sbjct 109 GCAA-AATAGGCTCCAT 94 >seq354 Length=3526367 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || |||| || || || |||||||| |||||||| || || ||||| ||| Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||||||||| | || ||||| | || ||||| || || || || | ||||| | Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||| ||| Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || |||| || || || |||||||| |||||||| || || ||||| ||| Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || ||||||||||| | || ||||| | || ||||| || || || || | ||||| | Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||| ||| Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || ||||||||||| || || || ||||| || | || || || | Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||| || || ||||||| ||||| || || || | || || ||||||||||||| Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || |||| || ||||| | || || || |||||||| Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || |||||||| || || | ||||| || ||||| ||||| ||||| || | || | Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| || | || |||||||| || || || ||||| || |||| | ||| Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170 Query 62457 CTATTTCTAAGACCGT 62472 || ||||||| |||| Sbjct 777171 CTGTTTCTAACGCCGT 777186 >seq1486 Length=661795 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || |||||||||||||| ||||| || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| || || || |||||||| || || || || || || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 33446 C 33446 | Sbjct 352473 C 352473 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || |||||||||||||| ||||| || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| || || || |||||||| || || || || || || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 33446 C 33446 | Sbjct 357419 C 357419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622656151281320