Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 241 3e-58
seq10769 114 3e-20
>seq1148
Length=2189075
Score = 241 bits (266), Expect = 3e-58
Identities = 580/869 (67%), Gaps = 18/869 (2%)
Strand=Plus/Minus
Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507
|| ||||||||||| ||| | ||||| || || | || ||||| || || || |||
Sbjct 534508 GAGCGCCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGAT 534449
Query 363508 GCCGCGATTGAAACATATAAGCTTCTA----AGTGCTCGTGTATTCACGCACGCCACGCC 363563
||||| ||||| || || || || || || | | || ||||||||||| | ||
Sbjct 534448 GCCGCCATTGAGACGTACAACCTGCTTTCAGAGAGATGGT----TCACGCACGCCTCACC 534393
Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623
|| | | ||| ||||| || |||||| |||| ||||| || ||| ||
Sbjct 534392 CACTCTTTTCAACGCTGGCACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCAT 534333
Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683
||||||||| |||||| || |||| ||||| || ||| | ||||| || || |||||
Sbjct 534332 GAAGGACGACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAA 534273
Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTC 363742
||||| || || || || || || | | || | ||| | ||| |||||
Sbjct 534272 ATCGGCAGGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTG-GCAGCTACATCG 534214
Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802
|||||| || |||| || || ||||| |||||||| ||||| | |||| || |
Sbjct 534213 CCGGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACACGG 534154
Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862
|| | ||||| |||||||| || ||||| || || || || ||||| || ||||
Sbjct 534153 CGCGCTACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCCTTCGCCATGTACCTGGAGC 534094
Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922
| || || || || || || || ||||| ||| ||||| || ||||||||
Sbjct 534093 CGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAGAGGAGC 534034
Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982
||| || ||||| ||||||| | || ||| | | || | || |||||| | || |
Sbjct 534033 AGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAGGGTAG 533974
Query 363983 AG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041
|| ||| || | ||||| ||| | || ||| | || || || || || |||
Sbjct 533973 AGAGCA-ACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACGAGTGC 533915
Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA- 364100
|||||||| || | || ||| | ||| | ||||| |||||| || || ||
Sbjct 533914 TGGGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGG-CCGGGTC--AAG 533858
Query 364101 --GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158
| | || ||| || | |||| |||||||| || || |||| ||||| ||
Sbjct 533857 CGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACGGGC 533798
Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218
|| || || ||| | ||||| ||| | ||||| |||||| |||||||||| |||| ||
Sbjct 533797 ACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTGGGC 533738
Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278
|| || || |||||||| || || ||||| | ||||||||| | ||||||
Sbjct 533737 ACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAGGTG 533678
Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCT 364307
||||| || ||||| || || | |||||
Sbjct 533677 GCCGTGTGCAACCTAGCCTCCGTGGCGCT 533649
Score = 98.7 bits (108), Expect = 3e-15
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809
|||||||||||||| || || ||||| |||||||| || |||||||||| | | || ||
Sbjct 533203 GCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTTGGCAACAACGAGTCCATTGAGGCG 533144
Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869
| || ||||| | || ||||| |||| || ||||| || || | | || || |
Sbjct 533143 TACACCAGCAACATATACACACGCAGGGTGCTCTCCGGCGAGTTCCAGTGCGTCAACCCG 533084
Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923
||||| | |||||||| | || | ||||| ||| | || ||||||||||
Sbjct 533083 CACCTACTGAAGGATCTCACTGAGAGGGGGCTATGGAGCGAGGACATGAAGAAC 533030
>seq10769
Length=223
Score = 114 bits (126), Expect = 3e-20
Identities = 134/178 (75%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCATTCGCGGA 22490
|| ||||| |||||||||||||| | || ||||| ||| | || ||| | || ||
Sbjct 42 ATCAAGAAGAAGGCAGATTGGGCCTTAAAGTGGATAGAATCACCAA-GTT---TTGCTGA 97
Query 22491 ACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAAT 22550
||| || ||||| ||||| | || || |||||||||||||| || || |||||| | ||
Sbjct 98 ACGCCTGATTGCTTTTGCAGCTGTGGAGGGCATTTTCTTTTCAGGGGCCTTTTGTTCTAT 157
Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| ||| | |||||||||| | | ||||| || | || |||||||| ||||| |||
Sbjct 158 TTTCTGGTTGAAAAAACGTGGATTGATGCCCGGATTGACCTTTTCAAACGAGTTGATT 215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302729433328814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |