Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1148 241 3e-58 seq10769 114 3e-20 >seq1148 Length=2189075 Score = 241 bits (266), Expect = 3e-58 Identities = 580/869 (67%), Gaps = 18/869 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | ||||| || || | || ||||| || || || ||| Sbjct 534508 GAGCGCCCGCAGCACATGCTGATGCGGGTGGCGGTGGGCATCCACGGCGCGCGCGTGGAT 534449 Query 363508 GCCGCGATTGAAACATATAAGCTTCTA----AGTGCTCGTGTATTCACGCACGCCACGCC 363563 ||||| ||||| || || || || || || | | || ||||||||||| | || Sbjct 534448 GCCGCCATTGAGACGTACAACCTGCTTTCAGAGAGATGGT----TCACGCACGCCTCACC 534393 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || | | ||| ||||| || |||||| |||| ||||| || ||| || Sbjct 534392 CACTCTTTTCAACGCTGGCACCAACCGGCCACAGTTGTCCAGCTGCTTCCTGCTAGCCAT 534333 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 ||||||||| |||||| || |||| ||||| || ||| | ||||| || || ||||| Sbjct 534332 GAAGGACGACAGCATCGATGGCATCTACGACACGCTCAAGCAGTGTGCCCTCATCTCCAA 534273 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTC 363742 ||||| || || || || || || | | || | ||| | ||| ||||| Sbjct 534272 ATCGGCAGGTGGCATCGGCGTGGCGGTCAGCTGCATCCGTTCCACTG-GCAGCTACATCG 534214 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 |||||| || |||| || || ||||| |||||||| ||||| | |||| || | Sbjct 534213 CCGGCACCAATGGCAACTCCAACGGCCTGGTGCCCATGCTGCGTGTCTACAACAACACGG 534154 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || | ||||| |||||||| || ||||| || || || || ||||| || |||| Sbjct 534153 CGCGCTACGTGGACCAGGGAGGCAACAAGCGGCCCGGCGCCTTCGCCATGTACCTGGAGC 534094 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || || || || || || ||||| ||| ||||| || |||||||| Sbjct 534093 CGTGGCACTTTGACATCTTCGACTTCCTGGAGCTGAAGAAGAACACAGGCAAAGAGGAGC 534034 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 ||| || ||||| ||||||| | || ||| | | || | || |||||| | || | Sbjct 534033 AGCGCGCCCGTGACCTGTTCTTCGGTCTCTGGATCCCAGATCTGTTCATGAAGAGGGTAG 533974 Query 363983 AG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 || ||| || | ||||| ||| | || ||| | || || || || || ||| Sbjct 533973 AGAGCA-ACCAGGACTGGTCGCTCATGTGTCCAAATGAGTGCCCTGGCCTGGACGAGTGC 533915 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA- 364100 |||||||| || | || ||| | ||| | ||||| |||||| || || || Sbjct 533914 TGGGGTGATGAGTTTGAGGCTTTGTACACACGCTATGAGAAGGAGGG-CCGGGTC--AAG 533858 Query 364101 --GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 | | || ||| || | |||| |||||||| || || |||| ||||| || Sbjct 533857 CGGGTGGTGAAAGCCCAGCAGGTGTGGTACGCCATCATCGAGTCTCAGACAGAGACGGGC 533798 Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218 || || || ||| | ||||| ||| | ||||| |||||| |||||||||| |||| || Sbjct 533797 ACGCCGTACATGCTCTACAAGGATGCATGCAATCGCAAGAGCAACCAGCAGAACCTGGGC 533738 Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 || || || |||||||| || || ||||| | ||||||||| | |||||| Sbjct 533737 ACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTCGAATACACCAGCCAGGACGAGGTG 533678 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||||| || ||||| || || | ||||| Sbjct 533677 GCCGTGTGCAACCTAGCCTCCGTGGCGCT 533649 Score = 98.7 bits (108), Expect = 3e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 |||||||||||||| || || ||||| |||||||| || |||||||||| | | || || Sbjct 533203 GCGCCCATGCCCACCGCCTCCACTGCGCAGATCCTTGGCAACAACGAGTCCATTGAGGCG 533144 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || ||||| |||| || ||||| || || | | || || | Sbjct 533143 TACACCAGCAACATATACACACGCAGGGTGCTCTCCGGCGAGTTCCAGTGCGTCAACCCG 533084 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923 ||||| | |||||||| | || | ||||| ||| | || |||||||||| Sbjct 533083 CACCTACTGAAGGATCTCACTGAGAGGGGGCTATGGAGCGAGGACATGAAGAAC 533030 >seq10769 Length=223 Score = 114 bits (126), Expect = 3e-20 Identities = 134/178 (75%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCATTCGCGGA 22490 || ||||| |||||||||||||| | || ||||| ||| | || ||| | || || Sbjct 42 ATCAAGAAGAAGGCAGATTGGGCCTTAAAGTGGATAGAATCACCAA-GTT---TTGCTGA 97 Query 22491 ACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAAT 22550 ||| || ||||| ||||| | || || |||||||||||||| || || |||||| | || Sbjct 98 ACGCCTGATTGCTTTTGCAGCTGTGGAGGGCATTTTCTTTTCAGGGGCCTTTTGTTCTAT 157 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||| | |||||||||| | | ||||| || | || |||||||| ||||| ||| Sbjct 158 TTTCTGGTTGAAAAAACGTGGATTGATGCCCGGATTGACCTTTTCAAACGAGTTGATT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302729433328814