Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 116 3e-21
>seq1473
Length=2736273
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| || | ||| || |||||||| || || ||||||||||| |
Sbjct 1452916 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 1452857
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || |||| ||||||||| ||| | || | || ||| ||||| |||
Sbjct 1452856 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGCTGGTCAGGAGGA 1452797
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| |||||||| ||||| | ||| || | | |||||||| | | |||
Sbjct 1452796 ATGCCTTCTTTGTCCTGAATTTTCACCTTGACATTTTCAACAGTGTCACTGTCCTCAACC 1452737
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||||||||| || || || || || ||||| ||||||||
Sbjct 1452736 TCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1452690
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | || || | ||| || ||||||||||| || ||||||||||| |
Sbjct 1453600 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453541
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || || | ||||||||| ||| | || | || ||||||||| |||
Sbjct 1453540 AGGGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453481
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| |||||||| ||||| |||||| | |||||||||| | | |||
Sbjct 1453480 ATGCCTTCTTTGTCCTGAATTTTGACCTTCACATTTTCCACAGTGTCACTGTCCTCAACC 1453421
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| ||||| || || || || || ||||| || |||||
Sbjct 1453420 TCTAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 1453374
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| || | ||| || ||||| ||||| || ||||||||||| |
Sbjct 1454056 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 1453997
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || |||| ||||||||| ||| | || | || ||||||||| |||
Sbjct 1453996 AGAGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453937
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| || ||||| |||| |||||| | | |||||||| | ||| |
Sbjct 1453936 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAACAGTGTCACTTCCCTCAACT 1453877
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || || || ||||| ||||| ||||||||
Sbjct 1453876 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 1453830
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | || || | ||| || ||||||||||| || |||||||||||||
Sbjct 1453372 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1453313
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || |||| ||||||||| ||| | || | || ||||||||| |||
Sbjct 1453312 AGGGTGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453253
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| |||||||| |||| |||||| | | || ||||| | |||
Sbjct 1453252 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1453193
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||| ||| || || || || || || ||||| ||||||||
Sbjct 1453192 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1453146
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | || || | ||| || ||||||||||| || ||||||||||| |
Sbjct 1453144 CCACCTCGCAGACGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453085
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || |||| ||||||||| ||| | || | || ||||||||| |||
Sbjct 1453084 AGGGAGCGGCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453025
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| |||||||| |||| |||||| | | || ||||| | |||
Sbjct 1453024 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAACTGTGTCACTCCCCTCAACC 1452965
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||| ||| || || || || || || ||||| ||||||||
Sbjct 1452964 TCAAGAGTGACGGTCTTGCCAGTTAGGGTCTTTACAAAGATCTGCAT 1452918
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| || | ||| || ||||||||||| || ||||||||||| |
Sbjct 1453828 CCACCTCGCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1453769
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || |||| ||||||||| ||| | || | || ||||||||| |||
Sbjct 1453768 AGGGTCCGTCCATCTTCCAGTTGTTTGCCAGCAAATATCAACCTCTGTTGGTCAGGAGGA 1453709
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| |||||||| ||||| |||||| | | ||||| || | |||
Sbjct 1453708 ATGCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTCTCAACAGTATCACTCCCCTCAACC 1453649
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||| || || || || || || || ||||| || |||||
Sbjct 1453648 TCAAGAGTGACAGTCTTGCCAGTTAGGGTCTTCACAAATATTTGCAT 1453602
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/231 (68%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| || | ||| || || ||||| ||||| ||||||||||| |
Sbjct 1454284 CCACCTCGCAGACGCAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAT 1454225
Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| ||| |||||| || ||||| || || ||| | || | || ||| || ||
Sbjct 1454224 AAGGT----GCGTCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGG 1454169
Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884
|| | ||| || ||||| |||| |||||| | | |||||||| | | |||
Sbjct 1454168 GGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAACAGTGTCACTGCCCTC 1454109
Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || || || || || ||||| ||||||||
Sbjct 1454108 GACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCAT 1454058
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || ||||||||||| || |||||||| || | | ||||| | | || |||| | |
Sbjct 1454488 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTTTGGTCATCTTCCAGTGGC 1454429
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
||||| ||| | || | || ||| ||||| || | ||| || ||||| |||||
Sbjct 1454428 TTGCCGGCAAATATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTGG 1454369
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | |||||||| | | ||| || | ||||| || || |||||
Sbjct 1454368 GCCTTGACATTCTCAACAGTGTCACTAGTCTCGACCTCAAGGGTGACGGGCTTGCCGGTA 1454309
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||| ||||||||
Sbjct 1454308 AGGGTCTTCACAAATATCTGCAT 1454286
Score = 82.4 bits (90), Expect = 6e-11
Identities = 150/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| || | ||| || ||||||||||| || ||||||||||| | | || | | ||
Sbjct 2587714 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATC 2587655
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || || || ||| |||| | || ||| ||||| || | ||| || |||||
Sbjct 2587654 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 2587595
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || ||| || || | | | |||||| | |||||| || | |||||||
Sbjct 2587594 CTGGATTTTGGCT--TTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGATG 2587537
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|| || || || || || || ||||| |||||||| ||
Sbjct 2587536 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 2587499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404903469377230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |