Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1148 389 5e-103 seq28210 131 2e-25 seq354 100 4e-16 seq10769 95.1 2e-14 seq1486 87.8 2e-12 seq6295 82.4 1e-10 >seq1148 Length=2189075 Score = 389 bits (430), Expect = 5e-103 Identities = 1072/1636 (66%), Gaps = 13/1636 (1%) Strand=Plus/Plus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || ||||| || || | || | || || || || || ||||| | || |||| Sbjct 533334 TACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAG 533393 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || | || |||||||||| |||| || |||||| || |||| ||||| || | Sbjct 533394 TAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAAGGGCTGC 533453 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | |||||| || ||||| || | || || || || || || || || | || | | Sbjct 533454 CGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGC 533513 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || ||| | || || || | || || || || || || || || | ||||| Sbjct 533514 ATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGG 533573 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCT 62728 || |||| || |||||| || || ||| || || || || ||| | Sbjct 533574 TTCTTGACGATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTATGTGCGCTCGGGG 533633 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62786 | || ||||||| | || || || || || || || ||||| ||||| | | || Sbjct 533634 GTGACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCCTGGCTG 533693 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | |||| | ||||| ||||| || || || ||||||||||| || | || || | Sbjct 533694 GTG--TATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCT 533751 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 | || ||||| || || |||||||| || || ||| | || || || || || ||| Sbjct 533752 GGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCT 533811 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 62966 |||| || || || || | ||| || | || || | | ||| | | Sbjct 533812 GAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCCGCTTGA--CCCGGCC 533869 Query 62967 CTCTTTCGTATAG--TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 ||| ||| |||| ||| ||||| || ||||| || ||||| | |||||| || Sbjct 533870 CTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAGGCC 533929 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||| || |||| |||||||| | |||||| || || || || | ||||| || Sbjct 533930 AGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCATGAA 533989 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 ||||| || ||||| ||| | | || || || | || | || ||||| || ||||| Sbjct 533990 CAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCCTGT 534049 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||| || || || ||||| | | || ||| | |||||||| |||| ||| ||||| Sbjct 534050 GTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGC 534109 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | | || ||||| ||||| |||||||| || | ||| | || ||||| || || || Sbjct 534110 GAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGAC 534169 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324 | || ||| || | | || ||||| | |||||||| || | ||| ||||| ||| | Sbjct 534170 ACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGT 534229 Query 63325 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 || ||| || || | | | || || || |||||| ||| ||||| | || || Sbjct 534230 GGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACA 534289 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | || | ||| || |||||||| || || || || ||| ||||| || || || || Sbjct 534290 CTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349 Query 63445 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 ||| |||| || | || | || || || || || | || || || ||||| || || Sbjct 534350 GCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGTGAA 534409 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 |||| | || ||||| || |||||||||||||| || | || | | || || Sbjct 534410 CCATCTCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGTGGAT 534469 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || || || ||||| | ||||||||| || | || | | |||| ||| || || Sbjct 534470 GCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCGCTCTGCCACCTTGCCGTTGATCTT 534529 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 | || ||||| |||| || || || ||||| | ||||| || ||||| || || Sbjct 534530 GAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGTCGCGGTC 534589 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 63744 ||| || || ||||||| || ||||| | | || | |||| || | || Sbjct 534590 GTAGATGATGGCCGAGTTCAGGCGGTCCTTGTGCTCCAGGACAATGTCCAGCGT-CTCCT 534648 Query 63745 T-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 63803 | || || ||||| |||| | ||| || ||||| |||||||| | ||||||| Sbjct 534649 TGGAGATCATAGGCGAATGACGGCGATTGAGCGGGTTGACGTAGTTGAAAAGGTCCTCCA 534708 Query 63804 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGG 63863 | || || || || | || || || || ||||| || || || || || || | || | Sbjct 534709 TGACATCGCTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACCGCGATGCGCGCTG 534768 Query 63864 CTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAG 63923 | | |||||||| || || || | || || ||||| || || ||||| ||||| | Sbjct 534769 CCAAGATGGCATAGTCGGGGTGCTTGGTGGTGAGCGTGGCGGCGATCTCGGCCGCCAGCG 534828 Query 63924 TGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 | |||| || ||||| || |||||| | || | || ||||| |||||||| | || | Sbjct 534829 TATCCAGCTCCACCGTGGTCACACCACTGTACAGGCCCTGGATCACCTTCATGGTGATCT 534888 Query 63984 TAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGA 64043 | || || | || | ||| | |||||| || | || || || || |||| Sbjct 534889 GAGCCGGGTCCACGAAGTCCGGGTTGAGGCCATAGCAGAGCTTCTGGATGCGCGAGGTGA 534948 Query 64044 TTTTATCAAACATGAC 64059 ||||||| |||||||| Sbjct 534949 TTTTATCGAACATGAC 534964 >seq28210 Length=470 Score = 131 bits (144), Expect = 2e-25 Identities = 259/377 (69%), Gaps = 15/377 (4%) Strand=Plus/Minus Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 || ||||| || ||| || ||||| |||||||||| ||| ||| |||| |||||| Sbjct 464 TTCTTTTCCTTTTCATCCTTCACATAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGA 405 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC- 33025 ||||| || || |||||||| || ||||| | | || || | | || || || Sbjct 404 ATGTTCTCCATCATGATTTGAAACCCATAGAAAAACTTCGCTTCCGAATATTGGACCTCA 345 Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | |||||||| || || |||||||| ||||| || || ||| || || |||||||| Sbjct 344 TTTACAAAAT-TCTCAGCCAAATTTTCGTTCACGATCCCATCAGATGCAGCGAAAAACGC 286 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCATTGAT 33142 ||| | ||| ||||| ||||| |||||| | || | | |||||||| | Sbjct 285 CAAAATATGCTTTATGAAATAGCGTTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAG 226 Query 33143 ATCTT----TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 ||||| ||| | |||| ||||| | |||||||| | ||||| ||||||| Sbjct 225 ATCTTGGTGTAGGTCTATC----TCTTCTGCCGTCCAAAAACAAGCCTCACATTTTTTAT 170 Query 33199 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT-TTGGATTTTTT 33257 || | ||| | || || | |||||| |||||||| || |||| | || | ||| || Sbjct 169 ACCACTCCCACAAATCGTGGTGTTGAATGGGAAAAATTACGAATCGGTCTTCGTTTTCTT 110 Query 33258 GCAAGGATTGGTTCCAT 33274 |||| || || ||||| Sbjct 109 GCAA-AATAGGCTCCAT 94 >seq354 Length=3526367 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || |||| || || || ||||| || |||||||| || || ||||| ||| Sbjct 780424 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 780483 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||||||||| | || ||||| | || ||||| || || || || | ||||| | Sbjct 780484 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 780543 Query 63587 ATGTGCTGAGGTCTTTCA 63604 |||||||| ||||| ||| Sbjct 780544 ATGTGCTGGGGTCTCTCA 780561 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || |||| || || || ||||| || |||||||| || || ||||| ||| Sbjct 782857 GTACCAGCGTTGAATAGAGTCGGGGAGGCGTGCGTGAACCATTTCTCTGACAGTAGGTTG 782916 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || ||||||||||| | || ||||| | || ||||| || || || || | ||||| | Sbjct 782917 TAAGTCTCAATAGCGGCATCGATATCTCCTTTGTGAATGCCCACCGCCACTCTCATTAGC 782976 Query 63587 ATGTGCTGAGGTCTTTCA 63604 |||||||| ||||| ||| Sbjct 782977 ATGTGCTGGGGTCTCTCA 782994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || |||||||| || || | ||||| || ||||| ||||| ||||| || | || | | Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| || | || |||||||| || || || ||||| || |||| | ||| Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170 Query 62312 CTATTTCTAAGACCGT 62327 || ||||||| |||| Sbjct 777171 CTGTTTCTAACGCCGT 777186 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||| ||||| || || || ||||| || | || || || | Sbjct 784178 CACTGAAGACTTTCTTGGTTTCCTTGTGCAGGTTAGACACGGCAATCCGTGCTGCCAGGA 784237 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||| || || ||||||| ||||| || || || | || || ||||||||||||| Sbjct 784238 TGGCGTAGTCGGGATGTTTGGTAGTCAGGGTAGCGGCGGTCTCTGCGGCCAGAGTGTCCA 784297 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || |||| || ||||| | || ||||| |||||||| Sbjct 784298 GCTCCACAGTGCTTACGCCGTTATACAAACCCTGGATCACCTTCAT 784343 >seq10769 Length=223 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 32696 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 32755 ||| || ||||| ||||| || | ||||||||| | ||||| ||||| | ||| || || Sbjct 215 AATCAACTCGTTTGAAAAGGTCAATCCGGGCATCAATCCACGTTTTTTCAACCAGAAAAT 156 Query 32756 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 32815 || ||| | || ||||||||||| || || || || ||||| ||||| || | || Sbjct 155 AGAACAAAAGGCCCCTGAAAAGAAAATGCCCTCCACAGCTGCAAAAGCAATCAGGCGTTC 96 Query 32816 TCCATAAC-CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 32874 || ||| || | | | |||||||||| |||||||| |||||||| || | | Sbjct 95 AGCAAAACTTGGTGAT----TCTATCCACTTTAAGGCCCAATCTGCCTTCTTCTTGATAG 40 Query 32875 AAGGCATTGTCTCTATAGCATTAAAGAG-ATAGtttttt 32912 || | | || || || |||||||| ||| | |||| Sbjct 39 CCGGAAAATTTTCAATGGCCTTAAAGAGTATATTCTTTT 1 >seq1486 Length=661795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 352593 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 352534 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| || || || || || ||||| || || || || || || || | Sbjct 352533 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 352474 Query 32803 C 32803 | Sbjct 352473 C 352473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || || | |||||||| || |||||||||||||| ||||| || || | Sbjct 357299 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGTCCGGGCATCAGGCCGCGTTTCT 357358 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| || || || || || ||||| || || || || || || || | Sbjct 357359 TCAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACGGCGGCGAAAG 357418 Query 32803 C 32803 | Sbjct 357419 C 357419 >seq6295 Length=211 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 |||||| | |||||||||||||| || || | ||| || || ||||| | | ||||||| Sbjct 19 AATAAATGTATCTGCTAATCCTTGTACGCCTAAACCAATTGGCCTATGGCGCATATTAGA 78 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62667 | |||| |||||| | ||||||||| || ||||||| | ||||| Sbjct 79 GTTTTCTGCTTCTTTTACAGGATAATAGTTCCTATCTATTACCTTATT 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633335959209200