Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1473 122 8e-23 >seq1473 Length=2736273 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || || || ||||||| | ||||| ||| | Sbjct 1453830 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAAGTTGAGGGAAGT 1453889 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||| | ||| ||||| |||||| ||||| ||||| ||||| ||||||||| Sbjct 1453890 GACACTGTTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAA 1453949 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||||||| | ||||||| |||||| | || ||||| Sbjct 1453950 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1454009 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 1454010 ATCCAGAAGGAATCCACCCTCCATCTTGTCCT 1454041 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || || |||| | || || ||| | | Sbjct 1453146 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1453205 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | ||| ||||| |||||| ||||||||||| ||||| ||||||||| Sbjct 1453206 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453265 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||||||| | ||||||| ||||| | ||| ||||| Sbjct 1453266 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1453325 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 ||||| || || ||||| || ||| Sbjct 1453326 ATTCAGAAGGAGTCCACCCTCCAT 1453349 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| ||||||| | || || ||| | Sbjct 1454970 ATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGT 1455029 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | ||| |||| |||||| ||||| ||||| ||||| ||||| ||| Sbjct 1455030 GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 1455089 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||||||||||||||||| ||||| | |||||||| Sbjct 1455090 CAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAAC 1455149 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || ||| | || || Sbjct 1455150 ATCCAGAAAGAATCAACCCTCCATCTTGTCCT 1455181 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| | ||||| | || || ||| | Sbjct 1453374 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGT 1453433 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||| | || ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 1453434 GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453493 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||||||| | ||||||| ||||| | || ||||| Sbjct 1453494 CAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAAC 1453553 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || || || || ||||| || ||| Sbjct 1453554 ATCCAGAAGGAGTCCACCCTCCAT 1453577 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || || |||| | || || ||| | | Sbjct 1452918 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1452977 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | ||| ||||| |||||| ||||||||||| ||||| ||||||||| Sbjct 1452978 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453037 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||||||| | ||||||| ||| | | || ||||| Sbjct 1453038 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAAC 1453097 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || || || || ||||| || ||| Sbjct 1453098 ATCCAGAAGGAGTCCACCCTCCAT 1453121 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || || | |||| | || || ||| | | Sbjct 1453602 ATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1453661 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||| | ||| |||| || |||| ||| ||||||||||| ||||| |||||||| Sbjct 1453662 GATACTGTTGAGAACGTGAAGGCCAAAATTCA-GGACAAAGAAGGCATTCCTCCTGACCA 1453720 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| ||||||||| | ||||||| || || | || ||||| Sbjct 1453721 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAA 1453780 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 1453781 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 1453813 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || ||||||| | || || ||| | Sbjct 1454058 ATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGGGCAGT 1454117 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||| | ||| ||||| |||||| ||||| ||||| ||||| ||||| || Sbjct 1454118 GACACTGTTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 1454177 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || ||||||||||||| ||||| | || ||||| Sbjct 1454178 CAGAGGTTGATCTTTGCTGGTAAGCAATTAGAAGATGGACGCACCTTATCTGACTACAAC 1454237 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || ||| | || || Sbjct 1454238 ATCCAAAAAGAGTCTACCCTTCATCTTGTCCT 1454269 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| || ||| | | Sbjct 2590401 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2590342 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| |||| || ||||| ||||| |||||||||||| Sbjct 2590341 GACACTATTGAG--AATGTCAAAGCCAAAATCCAG-GACAAGGAAGGCATTCCACCTGAC 2590285 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | ||||| | ||||||| | || ||| Sbjct 2590284 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACTCTCTCTGACTAC 2590225 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | || || Sbjct 2590224 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 2590190 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| | || || || | |||| | || || ||| | Sbjct 1452461 AATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAG 1452520 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||| | ||| ||||| |||||| |||| ||||| |||||||||||||| Sbjct 1452521 TGATACTGTTGAGAATATGAAGGCCAAAATCCAGTACAAGGAAGGCATTCCACCTGACCA 1452580 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || || || ||||||||||| ||||||| ||||| | || ||||| Sbjct 1452581 ACAGAGGTTGATATTCGCTGGCAAACAATTGGAAGATGGCCGCACCCTCTCTGACTACAA 1452640 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 || || || || ||||| || ||| Sbjct 1452641 CATCCAGAAGGAGTCCACCCTCCAT 1452665 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||||| | || || ||| | Sbjct 1452690 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAGT 1452749 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| | || |||| | | |||| ||| ||||||||||| ||||| ||||| Sbjct 1452750 GACACTGTTGAAAATGTCA---AGGTGAAAATTCAG-GACAAAGAAGGCATTCCTCCTGA 1452805 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||| ||||||||| | ||||||| ||||| | || || Sbjct 1452806 CCAGCAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTA 1452865 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| ||||| || ||| | || || Sbjct 1452866 CAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCT 1452901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | ||||| || || |||| | || || ||| | | Sbjct 1454286 ATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAGT 1454345 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||| | ||| | ||| ||||| ||||| ||||| ||||| || ||||| Sbjct 1454346 GACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1454405 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| | | | |||||||| | || | |||||||| Sbjct 1454406 CAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAAC 1454465 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 1454466 ATCCAGAAGGAGTCCACCCTCCA 1454488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433130605148255