Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 122 8e-23
>seq1473
Length=2736273
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || | || || || ||||||| | ||||| ||| |
Sbjct 1453830 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAAGTTGAGGGAAGT 1453889
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||| | ||| ||||| |||||| ||||| ||||| ||||| |||||||||
Sbjct 1453890 GACACTGTTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAA 1453949
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||||||| | ||||||| |||||| | || |||||
Sbjct 1453950 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1454009
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || ||| | || ||
Sbjct 1454010 ATCCAGAAGGAATCCACCCTCCATCTTGTCCT 1454041
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| | || || || || |||| | || || ||| | |
Sbjct 1453146 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1453205
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| | ||| ||||| |||||| ||||||||||| ||||| |||||||||
Sbjct 1453206 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453265
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||||||| | ||||||| ||||| | ||| |||||
Sbjct 1453266 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1453325
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
||||| || || ||||| || |||
Sbjct 1453326 ATTCAGAAGGAGTCCACCCTCCAT 1453349
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || ||||| ||||||| | || || ||| |
Sbjct 1454970 ATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGT 1455029
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| | ||| |||| |||||| ||||| ||||| ||||| ||||| |||
Sbjct 1455030 GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 1455089
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct 1455090 CAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAAC 1455149
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || |||||||| || || ||| | || ||
Sbjct 1455150 ATCCAGAAAGAATCAACCCTCCATCTTGTCCT 1455181
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| | || || ||| | ||||| | || || ||| |
Sbjct 1453374 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGT 1453433
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||| | || ||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 1453434 GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453493
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||||||| | ||||||| ||||| | || |||||
Sbjct 1453494 CAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAAC 1453553
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
|| || || || ||||| || |||
Sbjct 1453554 ATCCAGAAGGAGTCCACCCTCCAT 1453577
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| | || || || || |||| | || || ||| | |
Sbjct 1452918 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1452977
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| | ||| ||||| |||||| ||||||||||| ||||| |||||||||
Sbjct 1452978 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453037
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||||||| | ||||||| ||| | | || |||||
Sbjct 1453038 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAAC 1453097
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
|| || || || ||||| || |||
Sbjct 1453098 ATCCAGAAGGAGTCCACCCTCCAT 1453121
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| | || || || | |||| | || || ||| | |
Sbjct 1453602 ATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1453661
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||| | ||| |||| || |||| ||| ||||||||||| ||||| ||||||||
Sbjct 1453662 GATACTGTTGAGAACGTGAAGGCCAAAATTCA-GGACAAAGAAGGCATTCCTCCTGACCA 1453720
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| || | || ||||| ||||||||| | ||||||| || || | || |||||
Sbjct 1453721 ACAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAA 1453780
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||| | || ||
Sbjct 1453781 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 1453813
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| | || || || ||||||| | || || ||| |
Sbjct 1454058 ATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGGGCAGT 1454117
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||| | ||| ||||| |||||| ||||| ||||| ||||| ||||| ||
Sbjct 1454118 GACACTGTTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 1454177
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || || ||||||||||||| ||||| | || |||||
Sbjct 1454178 CAGAGGTTGATCTTTGCTGGTAAGCAATTAGAAGATGGACGCACCTTATCTGACTACAAC 1454237
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| || || || ||| | || ||
Sbjct 1454238 ATCCAAAAAGAGTCTACCCTTCATCTTGTCCT 1454269
Score = 105 bits (116), Expect = 6e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| |||| || ||| | |
Sbjct 2590401 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 2590342
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| |||| || ||||| ||||| ||||||||||||
Sbjct 2590341 GACACTATTGAG--AATGTCAAAGCCAAAATCCAG-GACAAGGAAGGCATTCCACCTGAC 2590285
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || ||||| || || || | ||||| | ||||||| | || |||
Sbjct 2590284 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACTCTCTCTGACTAC 2590225
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||||| || ||| | || ||
Sbjct 2590224 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 2590190
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||||||||| | || || || | |||| | || || ||| |
Sbjct 1452461 AATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAG 1452520
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| ||| | ||| ||||| |||||| |||| ||||| ||||||||||||||
Sbjct 1452521 TGATACTGTTGAGAATATGAAGGCCAAAATCCAGTACAAGGAAGGCATTCCACCTGACCA 1452580
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| || | || || || ||||||||||| ||||||| ||||| | || |||||
Sbjct 1452581 ACAGAGGTTGATATTCGCTGGCAAACAATTGGAAGATGGCCGCACCCTCTCTGACTACAA 1452640
Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202
|| || || || ||||| || |||
Sbjct 1452641 CATCCAGAAGGAGTCCACCCTCCAT 1452665
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || ||| ||||||| | || || ||| |
Sbjct 1452690 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAGT 1452749
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||| | || |||| | | |||| ||| ||||||||||| ||||| |||||
Sbjct 1452750 GACACTGTTGAAAATGTCA---AGGTGAAAATTCAG-GACAAAGAAGGCATTCCTCCTGA 1452805
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| || | || ||||| ||||||||| | ||||||| ||||| | || ||
Sbjct 1452806 CCAGCAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTA 1452865
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || ||||| ||||| || ||| | || ||
Sbjct 1452866 CAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCT 1452901
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| ||||| | ||||| || || |||| | || || ||| | |
Sbjct 1454286 ATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAGT 1454345
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||| | ||| | ||| ||||| ||||| ||||| ||||| || |||||
Sbjct 1454346 GACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1454405
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| | | | |||||||| | || | ||||||||
Sbjct 1454406 CAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAAC 1454465
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 1454466 ATCCAGAAGGAGTCCACCCTCCA 1454488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433130605148255
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