Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq28210 127 2e-24 >seq28210 Length=470 Score = 127 bits (140), Expect = 2e-24 Identities = 221/318 (69%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424 || ||||| || | || ||||| |||| ||||| | |||||||| ||||| || Sbjct 440 TAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAAC 381 Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATT 93483 || |||||| | | ||||||| || || || || | ||||| |||| | | ||| Sbjct 380 CCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCTCAGCCAAATT 322 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 ||| || || || ||||| ||||| || ||||| ||||| ||||||||||| |||| Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262 Query 93544 CTCATCATCTTTAAGCT---TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 || ||||| || |||| | | |||||| || ||||||| || || | ||||| Sbjct 261 TTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTTC 202 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | |||||||| | || || |||||| ||| ||||| | || || | |||||| Sbjct 201 TGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGAAT 142 Query 93661 TGGAAATATGACAAAACG 93678 ||||| || || || || Sbjct 141 GGGAAAAATTACGAATCG 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556600627673480