Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq28210 127 2e-24
>seq28210
Length=470
Score = 127 bits (140), Expect = 2e-24
Identities = 221/318 (69%), Gaps = 5/318 (2%)
Strand=Plus/Minus
Query 93365 TATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAAT 93424
|| ||||| || | || ||||| |||| ||||| | |||||||| ||||| ||
Sbjct 440 TAGGTATCAATCAGAAGGGAATAAGTTTCTGAATGAATGTTCTCCATCATGATTTGAAAC 381
Query 93425 CCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATT 93483
|| |||||| | | ||||||| || || || || | ||||| |||| | | |||
Sbjct 380 CCATAGAAAAACTTCGCTTCCGAATATTGGACCTCATTTACAAAAT-TCTCAGCCAAATT 322
Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543
||| || || || ||||| ||||| || ||||| ||||| ||||||||||| ||||
Sbjct 321 TTCGTTCACGATCCCATCAGATGCAGCGAAAAACGCCAAAATATGCTTTATGAAATAGCG 262
Query 93544 CTCATCATCTTTAAGCT---TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600
|| ||||| || |||| | | |||||| || ||||||| || || | |||||
Sbjct 261 TTCGTCATCATTGAGCTTGGTGTTCCAATCCGAAAGATCTTGGTGTAGGTCTATCTCTTC 202
Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660
| |||||||| | || || |||||| ||| ||||| | || || | ||||||
Sbjct 201 TGCCGTCCAAAAACAAGCCTCACATTTTTTATACCACTCCCACAAATCGTGGTGTTGAAT 142
Query 93661 TGGAAATATGACAAAACG 93678
||||| || || || ||
Sbjct 141 GGGAAAAATTACGAATCG 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556600627673480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |