Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1473 93.3 4e-14 >seq1473 Length=2736273 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 |||||||||||| ||||| || || | || ||||| ||||| ||| | || ||| Sbjct 1452230 AAAAATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAAGG 1452289 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| || |||||| | || ||| ||||| ||||| ||||| |||| || Sbjct 1452290 CAGTGACACTGTTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCTCCTGA 1452349 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||| |||||| | || | ||| |||||||| ||||||||| || | | || || Sbjct 1452350 TCAGCAAAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCCTCTCTGACTA 1452409 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || ||| | || |||||||| | ||||| Sbjct 1452410 CAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1452460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || | || ||||||||||| ||| | || || ||| Sbjct 1452690 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAGGACAGT 1452749 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || |||||| | || || |||||| |||||||||||| |||| || || Sbjct 1452750 GACACTGTTGAAAATGTCAAGGTGAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAG 1452809 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| ||||||||| |||||||| || | | || || || Sbjct 1452810 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGACTACAAC 1452869 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||| || || || ||| | || |||||||||| ||||||| Sbjct 1452870 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGGCA 1452918 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || | || || || ||||| || | || || ||| Sbjct 1454970 ATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGT 1455029 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | |||| | || ||| ||||| ||||| ||||| ||||| |||||| Sbjct 1455030 GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 1455089 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || ||| | || | ||| ||||||||||| |||||| | | ||| | | ||||| | Sbjct 1455090 CAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCT--CTGATTACA 1455147 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || |||||||| || || ||| | || |||||||||| ||||| Sbjct 1455148 ACATCCAGAAAGAATCAACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1455196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || |||||||| || ||| | || || ||| Sbjct 1453374 ATGCAAATATTTGTGAAGACCCTCACTGGCAAAACTATCACCCTAGAGGTTGAGGACAGT 1453433 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || |||| | | || || |||||| |||||||||||| |||| || ||| Sbjct 1453434 GACACTGTGGAAAATGTGAAGGTCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453493 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | || | ||| ||||||||| | |||||| || | | || || || Sbjct 1453494 CAGAGGTTGATATTTGCTGGCAAACAACTCGAAGATGGCCGCACCCTCTCTGACTACAAC 1453553 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || ||| | || ||||||||||| ||||||| Sbjct 1453554 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGGCA 1453602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422847291663400