Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 143 2e-29
seq1148 93.3 4e-14
seq354 91.5 1e-13
>seq1473
Length=2736273
Score = 143 bits (158), Expect = 2e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271
|| ||| |||||||| ||||| || || |||| || || || |||| ||||| || ||
Sbjct 1452227 TGCAAAAATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTTGA 1452286
Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331
| || || || || || || | ||| ||||| || |||||||| |||||||| ||
Sbjct 1452287 AGGCAGTGACACTGTTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCTCC 1452346
Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391
||||| ||| | | || ||||| ||||||||||| || ||| ||||||| |||| ||
Sbjct 1452347 TGATCAGCAAAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCCTCTCTGA 1452406
Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|||||||| || ||||| |||||| | ||| | || ||||
Sbjct 1452407 CTACAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCG 1452448
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| || || | || ||||| || |||||||||| || || ||
Sbjct 1454970 ATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGT 1455029
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || || || || | ||| ||||| || |||||||| || ||||| || ||||||
Sbjct 1455030 GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 1455089
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | |||||||| |||||||| ||||| ||| |||||| |||| |||||||||
Sbjct 1455090 CAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAAC 1455149
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || |||||||| ||| | ||| | || |||| |||| || ||
Sbjct 1455150 ATCCAGAAAGAATCAACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1455196
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || |||| || || || ||||||||||| || || |
Sbjct 1452462 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1452521
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| || || |||| || ||||| || ||||||| || |||||||| || |||
Sbjct 1452522 GATACTGTTGAGAATATGAAGGCCAAAATCCAGTACAAGGAAGGCATTCCACCTGACCAA 1452581
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | ||||| || |||||||| || || ||| ||||||| |||| || ||||||
Sbjct 1452582 CAGAGGTTGATATTCGCTGGCAAACAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 1452641
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||||| | ||| | || ||||| |||| || ||
Sbjct 1452642 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1452688
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || |||| || || || ||||||||||| || || |
Sbjct 1453146 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1453205
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || || || || | || ||||| || ||||| || || ||||| || || |||
Sbjct 1453206 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453265
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | |||||||| |||||||| | || ||| ||||||| ||||||| ||||||
Sbjct 1453266 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1453325
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || || |||||| | ||| | || ||||| |||| || ||
Sbjct 1453326 ATTCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453372
Score = 120 bits (132), Expect = 3e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| | ||||| || || | || || || || |||| ||||| || ||| |||
Sbjct 1454742 ATGCAGTTGTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAAGCCAAT 1454801
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| || || || |||| ||||| || |||||||| |||||||| || || |||
Sbjct 1454802 GATACAGTTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCTGACCAA 1454861
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | || || ||||| || || ||| |||| ||| ||| ||| |||| |||||||||
Sbjct 1454862 CAAAGGCTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTCTCTGATTACAAC 1454921
Query 22399 ATTCAAAAAGA 22409
|| ||||| ||
Sbjct 1454922 ATCCAAAAGGA 1454932
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || |||| || || || ||||||||||| || || |
Sbjct 1452918 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1452977
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || || || || | || ||||| || ||||| || || ||||| || || |||
Sbjct 1452978 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453037
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | |||||||| |||||||| | || ||| |||| || |||| || ||||||
Sbjct 1453038 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAAC 1453097
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||||| | ||| | || ||||| |||| || ||
Sbjct 1453098 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453144
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || |||| || || || ||||||||||| || || |
Sbjct 1453602 ATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1453661
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| || || | | || |||||||| ||||| || || ||||| || || |||
Sbjct 1453662 GATACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453721
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | |||||||| |||||||| | || ||| || ||| |||| || ||||||
Sbjct 1453722 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAAC 1453781
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||||| | ||| | || |||| |||| || ||
Sbjct 1453782 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1453828
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | ||||| || | ||||| ||||| || || || |
Sbjct 1454286 ATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAGT 1454345
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || || || || |||| |||| ||||||||||| || ||||| || || ||
Sbjct 1454346 GACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1454405
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | |||||||||||||| | | || ||| ||| ||| |||| |||||||||
Sbjct 1454406 CAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAAC 1454465
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 1454466 ATCCAGAAGGAGTCCACC 1454483
>seq1148
Length=2189075
Score = 93.3 bits (102), Expect = 4e-14
Identities = 201/295 (68%), Gaps = 7/295 (2%)
Strand=Plus/Plus
Query 130099 TTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCG 130158
||||| || ||||| ||| | ||||| ||||||||| || | || || || | |||
Sbjct 534057 TTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCG 534116
Query 130159 CCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAAC 130215
|| ||| ||| || || ||||| |||| |||| | | ||||||||||| |||| |
Sbjct 534117 CCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGC 534176
Query 130216 ATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGA 130275
|| | | ||| ||||||| |||| || |||| | ||| | |||||| | ||
Sbjct 534177 ATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGG 534236
Query 130276 ACG-TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCG 130334
| | ||| ||| | || ||||| || | |||| || || | || || | ||
Sbjct 534237 ATGCAGCTGACCGC-CACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACT-GCT 534294
Query 130335 T-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACA 130388
| ||||| || || |||||| |||| ||||| || || ||| ||| ||||| ||
Sbjct 534295 TGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349
>seq354
Length=3526367
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798
||||||||||| |||| ||||||||| || ||| ||||| || | | || || ||
Sbjct 778862 TACTCGACAATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTGGTTG 778921
Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848
|| ||| |||||||| || ||||||| ||||||||| |||||||||||
Sbjct 778922 CTCTTCCCATTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTC 778971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419536800386005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |