Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1473 143 2e-29 seq1148 93.3 4e-14 seq354 91.5 1e-13 >seq1473 Length=2736273 Score = 143 bits (158), Expect = 2e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| |||||||| ||||| || || |||| || || || |||| ||||| || || Sbjct 1452227 TGCAAAAATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTTGA 1452286 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | || || || || || || | ||| ||||| || |||||||| |||||||| || Sbjct 1452287 AGGCAGTGACACTGTTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGTATTCCTCC 1452346 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||| ||| | | || ||||| ||||||||||| || ||| ||||||| |||| || Sbjct 1452347 TGATCAGCAAAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACCCTCTCTGA 1452406 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| || ||||| |||||| | ||| | || |||| Sbjct 1452407 CTACAACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCG 1452448 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || ||||| || |||||||||| || || || Sbjct 1454970 ATGCAGATTTTTGTGAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTTGAGGACAGT 1455029 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || || | ||| ||||| || |||||||| || ||||| || |||||| Sbjct 1455030 GACACGGTTGAGAATGTGAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCTGATCAA 1455089 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | |||||||| |||||||| ||||| ||| |||||| |||| ||||||||| Sbjct 1455090 CAGAGGTTGATATTTGCTGGCAAACAATTAGAAGATGGCCGCACACTCTCTGATTACAAC 1455149 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| ||| | ||| | || |||| |||| || || Sbjct 1455150 ATCCAGAAAGAATCAACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1455196 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || || || ||||||||||| || || | Sbjct 1452462 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1452521 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || |||| || ||||| || ||||||| || |||||||| || ||| Sbjct 1452522 GATACTGTTGAGAATATGAAGGCCAAAATCCAGTACAAGGAAGGCATTCCACCTGACCAA 1452581 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | ||||| || |||||||| || || ||| ||||||| |||| || |||||| Sbjct 1452582 CAGAGGTTGATATTCGCTGGCAAACAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 1452641 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||| | || ||||| |||| || || Sbjct 1452642 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1452688 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || || || ||||||||||| || || | Sbjct 1453146 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1453205 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || || | || ||||| || ||||| || || ||||| || || ||| Sbjct 1453206 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453265 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | |||||||| |||||||| | || ||| ||||||| ||||||| |||||| Sbjct 1453266 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1453325 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | ||| | || ||||| |||| || || Sbjct 1453326 ATTCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453372 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || || |||| ||||| || ||| ||| Sbjct 1454742 ATGCAGTTGTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAAGCCAAT 1454801 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || || |||| ||||| || |||||||| |||||||| || || ||| Sbjct 1454802 GATACAGTTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGTATTCCCCCTGACCAA 1454861 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || ||| |||| ||| ||| ||| |||| ||||||||| Sbjct 1454862 CAAAGGCTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTCTCTGATTACAAC 1454921 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 1454922 ATCCAAAAGGA 1454932 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || || || ||||||||||| || || | Sbjct 1452918 ATGCAGATCTTTGTAAAGACCCTAACTGGCAAGACCGTCACTCTTGAGGTTGAGGGGAGT 1452977 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || || | || ||||| || ||||| || || ||||| || || ||| Sbjct 1452978 GACACAGTTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453037 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | |||||||| |||||||| | || ||| |||| || |||| || |||||| Sbjct 1453038 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGCCGCTCCCTCTCTGACTACAAC 1453097 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||| | || ||||| |||| || || Sbjct 1453098 ATCCAGAAGGAGTCCACCCTCCATCTTGTCTTGCGTCTGCGAGGTGG 1453144 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || |||| || || || ||||||||||| || || | Sbjct 1453602 ATGCAAATATTTGTGAAGACCCTAACTGGCAAGACTGTCACTCTTGAGGTTGAGGGGAGT 1453661 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| || || | | || |||||||| ||||| || || ||||| || || ||| Sbjct 1453662 GATACTGTTGAGAACGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCTGACCAA 1453721 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | |||||||| |||||||| | || ||| || ||| |||| || |||||| Sbjct 1453722 CAGAGGTTGATATTTGCTGGCAAACAACTGGAAGATGGACGGACCCTCTCTGACTACAAC 1453781 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | ||| | || |||| |||| || || Sbjct 1453782 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGCGAGGTGG 1453828 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || | ||||| ||||| || || || | Sbjct 1454286 ATGCAGATATTTGTGAAGACCCTTACCGGCAAGCCCGTCACCCTTGAGGTCGAGACTAGT 1454345 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || || |||| |||| ||||||||||| || ||||| || || || Sbjct 1454346 GACACTGTTGAGAATGTCAAGGCCCAAATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1454405 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | |||||||||||||| | | || ||| ||| ||| |||| ||||||||| Sbjct 1454406 CAGAGGTTGATATTTGCCGGCAAGCCACTGGAAGATGACCAAACCCTCTCTGATTACAAC 1454465 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 1454466 ATCCAGAAGGAGTCCACC 1454483 >seq1148 Length=2189075 Score = 93.3 bits (102), Expect = 4e-14 Identities = 201/295 (68%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 130099 TTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCG 130158 ||||| || ||||| ||| | ||||| ||||||||| || | || || || | ||| Sbjct 534057 TTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCG 534116 Query 130159 CCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAAC 130215 || ||| ||| || || ||||| |||| |||| | | ||||||||||| |||| | Sbjct 534117 CCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTAGACACGCAGC 534176 Query 130216 ATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGA 130275 || | | ||| ||||||| |||| || |||| | ||| | |||||| | || Sbjct 534177 ATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGG 534236 Query 130276 ACG-TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCG 130334 | | ||| ||| | || ||||| || | |||| || || | || || | || Sbjct 534237 ATGCAGCTGACCGC-CACGCCGATGCCACCTGCCGATTTGGAGATGAGGGCACACT-GCT 534294 Query 130335 T-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACA 130388 | ||||| || || |||||| |||| ||||| || || ||| ||| ||||| || Sbjct 534295 TGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAAGCA 534349 >seq354 Length=3526367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||||||||| |||| ||||||||| || ||| ||||| || | | || || || Sbjct 778862 TACTCGACAATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTGGTTG 778921 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||| |||||||| || ||||||| ||||||||| ||||||||||| Sbjct 778922 CTCTTCCCATTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTC 778971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419536800386005