Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1148 609 4e-169 seq1486 141 2e-28 seq1247 120 6e-22 seq354 114 2e-20 >seq1148 Length=2189075 Score = 609 bits (674), Expect = 4e-169 Identities = 1121/1622 (69%), Gaps = 50/1622 (3%) Strand=Plus/Plus Query 244003 CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA 244062 ||| || || || ||||| | || |||||| | ||||| ||| |||| || ||| Sbjct 533000 CTGTACGGATCCATTGTGAGCAATTAGCTGGTTCTTCATGTCCTCGCTCCATAGCCCC-- 533057 Query 244063 GCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCAC 244119 | ||| || ||| | |||||| ||| || ||| ||||| || || ||||| Sbjct 533058 -CTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTGACGCACTGGAACTCGCCGGAGAGCAC 533116 Query 244120 GCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTG 244179 | ||| ||| | ||||||| || || ||| ||| ||| ||||||| || ||||| Sbjct 533117 CCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTG 533176 Query 244180 CGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTG 244239 ||| ||| || || |||||||||| || |||||| ||||| ||||| |||||| | Sbjct 533177 CGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGC 533236 Query 244240 GATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCC 244299 ||| |||| |||||||||||| || | | | ||| || Sbjct 533237 GATCTTCTCCTTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATC-CGC---TG----- 533287 Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 |||||||||| |||| || | |||||||||||| || |||| ||| ||| |||||| Sbjct 533288 CCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGG 533347 Query 244360 ACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGA 244418 |||| || | | |||||||| ||||| | || || ||||||||||||| ||||||| Sbjct 533348 GCCGT-GCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGA 533406 Query 244419 AGATC---ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATC 244474 ||||| || ||| | || ||| ||| | || | || ||| |||| ||| | Sbjct 533407 AGATCTGAATATTGAGTA-GTTGCG--CCTCGGGGCTC-TCAAAGGGCTGCCGCATGAGA 533462 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||| |||||||||| ||||| ||||||||||| ||||| | ||| ||| |||||||| Sbjct 533463 ATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAG 533522 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 ||| || || ||||| ||||| ||||| |||||| | | |||||||||| | | Sbjct 533523 CGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACG 533582 Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 || | | |||| | |||||| || |||||||| || | ||||| | || Sbjct 533583 ATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTAT--GTGCG----CTCGGGGGTG 533636 Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCC 244714 || || |||||| || ||| ||| |||||||| ||||||||||| ||| Sbjct 533637 ---------ACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCC 533687 Query 244715 GAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774 | ||||||| | ||| ||||| ||||| ||||| |||||||||||||||||||||| | Sbjct 533688 TGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTC 533747 Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 || || ||| |||| ||||| || ||||||||||||||| | ||| || ||||| Sbjct 533748 TGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCT 533807 Query 244835 AGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTT 244893 ||| | ||| || | || ||| | | | || || ||| || || | || Sbjct 533808 GTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCC-GCTTGACCCG 533866 Query 244894 GCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG 244953 |||||| ||| ||||| ||||||| ||||| ||||| |||||| |||||| || Sbjct 533867 GCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAG 533926 Query 244954 GCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCAT 245013 ||| |||||| || |||||||| ||| || | | || ||||||| ||| Sbjct 533927 GCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCAT 533986 Query 245014 GAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCC 245073 ||| || || ||||||||||| | ||| ||||| | || | |||||| || ||| Sbjct 533987 GAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCC 534046 Query 245074 AGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGAC 245133 ||||||||| ||||||||| ||||| |||| ||| | |||||| ||||||| ||| | Sbjct 534047 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACAT 534106 Query 245134 AGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAA 245193 |||| ||||||||||||||||||||||||||||||||| | | | |||| | Sbjct 534107 GGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTA 534166 Query 245194 GATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC 245253 || ||||| | ||||| | |||||| |||| ||| |||||||| ||||||| ||| Sbjct 534167 GACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCC 534226 Query 245254 CTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGC 245313 || | || | ||||| | || ||| | || || || |||||||||||||| Sbjct 534227 AGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGC 534286 Query 245314 GCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAA 245373 || ||||| ||||| ||||| || |||||||| ||||||| ||||| || Sbjct 534287 ACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAA 534346 Query 245374 GCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 |||| ||||| ||| ||| | | ||| | |||||| |||||||| |||||| || Sbjct 534347 GCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGT 534406 Query 245434 AAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGT 245492 || | | ||| || || | |||||||| | || || | | |||||| Sbjct 534407 GAACCATC-TCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGT 534465 Query 245493 GGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCT--CGG 245549 |||| || || || ||| || ||||||| ||||| ||| || || | || Sbjct 534466 GGATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCG-CTC--TGCCACCTTGCCGT 534522 Query 245550 GTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGT 245609 |||||||| ||||||||||| || |||||||| |||||| | |||| |||| Sbjct 534523 TGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGT 534582 Query 245610 CG 245611 || Sbjct 534583 CG 534584 >seq1486 Length=661795 Score = 141 bits (156), Expect = 2e-28 Identities = 143/184 (78%), Gaps = 9/184 (5%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 |||||||||||||||||||||||||| || ||||| |||||| | ||||| ||| ||||| Sbjct 352171 GAGGCGCGCTGCTTCTACGGCTTCCAAATCGCCATGGAGAACATCCACTCGGAGATGTAC 352230 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG-TAAC---GGG-----CTG 42611 | || || |||| |||||| || ||| ||||| | || | | ||| Sbjct 352231 AGCCTCCTCATCGACACCTACATCAAAGACCCCAAAGAGCGGTCACTTAGAGAATACCTG 352290 Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671 ||||| ||||| || |||||||| || ||||||||||||| |||||||||||||||||| Sbjct 352291 TTCAACGCCATCGAAACGATGCCGTGTGTCAAGAAGAAGGCCGACTGGGCGCTCAACTGG 352350 Query 42672 ATCG 42675 |||| Sbjct 352351 ATCG 352354 Score = 141 bits (156), Expect = 2e-28 Identities = 115/137 (84%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 |||||| | |||| || || ||||||| ||||||||||||||||| ||| |||||||| Sbjct 352458 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 352517 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| | | | | | ||||||||||||||||||||| ||||| || Sbjct 352518 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 352576 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| ||||||| Sbjct 352577 CATCAGCAGAGACGAGG 352593 Score = 141 bits (156), Expect = 2e-28 Identities = 115/137 (84%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 |||||| | |||| || || ||||||| ||||||||||||||||| ||| |||||||| Sbjct 357434 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 357375 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| | | | | | ||||||||||||||||||||| ||||| || Sbjct 357374 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 357316 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| ||||||| Sbjct 357315 CATCAGCAGAGACGAGG 357299 Score = 111 bits (122), Expect = 3e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 353234 CCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAGCG 353293 Query 43130 CGTCGCCGACTACCAG 43145 ||||| ||| |||||| Sbjct 353294 CGTCGGCGAGTACCAG 353309 Score = 111 bits (122), Expect = 3e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 356655 CCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAGCG 356596 Query 43130 CGTCGCCGACTACCAG 43145 ||||| ||| |||||| Sbjct 356595 CGTCGGCGAGTACCAG 356580 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || |||||||| || ||||||||||||| ||||||||||||||| Sbjct 357604 CTGTTCAACGCCATCGAAACGATGCCGTGTGTCAAGAAGAAGGCCGACTGGGCGCTCAAC 357545 Query 42669 TGGATCG 42675 ||||||| Sbjct 357544 TGGATCG 357538 >seq1247 Length=1231281 Score = 120 bits (132), Expect = 6e-22 Identities = 109/135 (81%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 |||| | || || || ||| | || || ||||||||||||||||| ||| |||||||| | Sbjct 216483 CGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGC 216424 Query 42758 CATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCA 42816 ||||| |||| | ||| | | ||| || |||||||| ||||||| ||| ||||| |||| Sbjct 216423 CATCTACTGGTTGAAGAAAAGAGGCCTC-ATGCCCGGCCTCACCTACTCCAACGAGCTCA 216365 Query 42817 TCAGCAGGGACGAGG 42831 ||||| ||||||||| Sbjct 216364 TCAGCCGGGACGAGG 216350 >seq354 Length=3526367 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| | || ||| ||||| |||| ||||||||| || Sbjct 779315 CATGAAGAGGTCTGGGATCCACATAGCAAAGAAAAGGTCTCTGGCCCTCTGCTCCTCTTT 779374 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| | | ||||| ||||||||| || |||| ||||| ||||| | ||| Sbjct 779375 ACCCGTGTTCTTCTTTAACTCCAGAAAGTCAAATACATCGAAATGCCACGGCTCTAAGTA 779434 Query 245131 GACAGCGAGGGCGCCGGG 245148 |||||||| || ||||| Sbjct 779435 GACAGCGAATGCACCGGG 779452 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| | || ||| ||||| |||| ||||||||| || Sbjct 781734 CATGAAGAGGTCTGGGATCCACATAGCAAAGAAAAGGTCTCTGGCCCTCTGCTCCTCTTT 781793 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| | | ||||| ||||||||| || |||| ||||| ||||| | ||| Sbjct 781794 ACCCGTGTTCTTCTTTAACTCCAGAAAGTCAAATACATCGAAATGCCACGGCTCTAAGTA 781853 Query 245131 GACAGCGAGGGCGCCGGG 245148 |||||||| || ||||| Sbjct 781854 GACAGCGAATGCACCGGG 781871 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 |||| |||| ||||||||||||||| | || ||| | |||||||| || |||| ||| | Sbjct 778857 TGGTATACTCGACAATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCT 778916 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 | ||| ||| | ||||| ||||||||||| |||||| Sbjct 778917 GGTTGCTCTTCCCATTGCAAGCGTCCTTGTACAGCATG 778954 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||| || ||||| ||||| | ||| ||||| |||||| || | |||||| Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | || || || ||||| || ||| || || |||||||||| || |||| | Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| || ||||||||||| Sbjct 777171 CTGTTTCTAACGCCGTGCCT 777190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943897992921520