Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 609 4e-169
seq1486 141 2e-28
seq1247 120 6e-22
seq354 114 2e-20
>seq1148
Length=2189075
Score = 609 bits (674), Expect = 4e-169
Identities = 1121/1622 (69%), Gaps = 50/1622 (3%)
Strand=Plus/Plus
Query 244003 CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA 244062
||| || || || ||||| | || |||||| | ||||| ||| |||| || |||
Sbjct 533000 CTGTACGGATCCATTGTGAGCAATTAGCTGGTTCTTCATGTCCTCGCTCCATAGCCCC-- 533057
Query 244063 GCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCAC 244119
| ||| || ||| | |||||| ||| || ||| ||||| || || |||||
Sbjct 533058 -CTCTCAGTGAGATCCTTCAGTAGGTGCGGGTTGACGCACTGGAACTCGCCGGAGAGCAC 533116
Query 244120 GCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTG 244179
| ||| ||| | ||||||| || || ||| ||| ||| ||||||| || |||||
Sbjct 533117 CCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGACTCGTTGTTGCCAAGGATCTG 533176
Query 244180 CGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTG 244239
||| ||| || || |||||||||| || |||||| ||||| ||||| |||||| |
Sbjct 533177 CGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTGTTTCTCACACCGTGCTTGGC 533236
Query 244240 GATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCC 244299
||| |||| |||||||||||| || | | | ||| ||
Sbjct 533237 GATCTTCTCCTTGAGTAATGTCCAGTCCCACAGCGGCGTGGGAATC-CGC---TG----- 533287
Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359
|||||||||| |||| || | |||||||||||| || |||| ||| ||| ||||||
Sbjct 533288 CCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGG 533347
Query 244360 ACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGA 244418
|||| || | | |||||||| ||||| | || || ||||||||||||| |||||||
Sbjct 533348 GCCGT-GCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTAGTAGAGAGTCTCGA 533406
Query 244419 AGATC---ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATC 244474
||||| || ||| | || ||| ||| | || | || ||| |||| ||| |
Sbjct 533407 AGATCTGAATATTGAGTA-GTTGCG--CCTCGGGGCTC-TCAAAGGGCTGCCGCATGAGA 533462
Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534
|||||| |||||||||| ||||| ||||||||||| ||||| | ||| ||| ||||||||
Sbjct 533463 ATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCGGTGGCGCATGTTGGAG 533522
Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594
||| || || ||||| ||||| ||||| |||||| | | |||||||||| | |
Sbjct 533523 CGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCTGTTGAGGTTCTTGACG 533582
Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654
|| | | |||| | |||||| || |||||||| || | ||||| | ||
Sbjct 533583 ATGACTTTGGTGACGGCCGCCAGCTTCTTGAAGTCGTAT--GTGCG----CTCGGGGGTG 533636
Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCC 244714
|| || |||||| || ||| ||| |||||||| ||||||||||| |||
Sbjct 533637 ---------ACGTACATGTTGAGCGCCACGGAGGCTAGGTTGCACACGGCCACCTCGTCC 533687
Query 244715 GAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774
| ||||||| | ||| ||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 533688 TGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTC 533747
Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834
|| || ||| |||| ||||| || ||||||||||||||| | ||| || |||||
Sbjct 533748 TGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCT 533807
Query 244835 AGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTT 244893
||| | ||| || | || ||| | | | || || ||| || || | ||
Sbjct 533808 GTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTTCACCACCC-GCTTGACCCG 533866
Query 244894 GCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG 244953
|||||| ||| ||||| ||||||| ||||| ||||| |||||| |||||| ||
Sbjct 533867 GCCCTCCTTCTCATAGCGTGTGTACAAAGCCTCAAACTCATCACCCCAGCACTCGTCCAG 533926
Query 244954 GCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCAT 245013
||| |||||| || |||||||| ||| || | | || ||||||| |||
Sbjct 533927 GCCAGGGCACTCATTTGGACACATGAGCGACCAGTCCTGGTTGCTCTCTACCCTCTTCAT 533986
Query 245014 GAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCC 245073
||| || || ||||||||||| | ||| ||||| | || | |||||| || |||
Sbjct 533987 GAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCACGGGCGCGCTGCTCCTCTTTGCC 534046
Query 245074 AGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGAC 245133
||||||||| ||||||||| ||||| |||| ||| | |||||| ||||||| ||| |
Sbjct 534047 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAAGATGTCAAAGTGCCACGGCTCCAGGTACAT 534106
Query 245134 AGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAA 245193
|||| ||||||||||||||||||||||||||||||||| | | | |||| |
Sbjct 534107 GGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTA 534166
Query 245194 GATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC 245253
|| ||||| | ||||| | |||||| |||| ||| |||||||| ||||||| |||
Sbjct 534167 GACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCCATTGGTGCCGGCGATGTAGCTGCC 534226
Query 245254 CTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGC 245313
|| | || | ||||| | || ||| | || || || ||||||||||||||
Sbjct 534227 AGTGGAACGGATGCAGCTGACCGCCACGCCGATGCCACCTGCCGATTTGGAGATGAGGGC 534286
Query 245314 GCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAA 245373
|| ||||| ||||| ||||| || |||||||| ||||||| ||||| ||
Sbjct 534287 ACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCTGTCGTCCTTCATGGCTAGCAGGAA 534346
Query 245374 GCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433
|||| ||||| ||| ||| | | ||| | |||||| |||||||| |||||| ||
Sbjct 534347 GCAGCTGGACAACTGTGGCCGGTTGGTGCCAGCGTTGAAAAGAGTGGGTGAGGCGTGCGT 534406
Query 245434 AAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGT 245492
|| | | ||| || || | |||||||| | || || | | ||||||
Sbjct 534407 GAACCATC-TCTCTGAAAGCAGGTTGTACGTCTCAATGGCGGCATCCACGCGCGCGCCGT 534465
Query 245493 GGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCT--CGG 245549
|||| || || || ||| || ||||||| ||||| ||| || || | ||
Sbjct 534466 GGATGCCCACCGCCACCCGCATCAGCATGTGCTGCGGGCG-CTC--TGCCACCTTGCCGT 534522
Query 245550 GTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGT 245609
|||||||| ||||||||||| || |||||||| |||||| | |||| ||||
Sbjct 534523 TGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTTGAAGCCAAAGAAATTGTAGGAGAAGT 534582
Query 245610 CG 245611
||
Sbjct 534583 CG 534584
>seq1486
Length=661795
Score = 141 bits (156), Expect = 2e-28
Identities = 143/184 (78%), Gaps = 9/184 (5%)
Strand=Plus/Plus
Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560
|||||||||||||||||||||||||| || ||||| |||||| | ||||| ||| |||||
Sbjct 352171 GAGGCGCGCTGCTTCTACGGCTTCCAAATCGCCATGGAGAACATCCACTCGGAGATGTAC 352230
Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG-TAAC---GGG-----CTG 42611
| || || |||| |||||| || ||| ||||| | || | | |||
Sbjct 352231 AGCCTCCTCATCGACACCTACATCAAAGACCCCAAAGAGCGGTCACTTAGAGAATACCTG 352290
Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671
||||| ||||| || |||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 352291 TTCAACGCCATCGAAACGATGCCGTGTGTCAAGAAGAAGGCCGACTGGGCGCTCAACTGG 352350
Query 42672 ATCG 42675
||||
Sbjct 352351 ATCG 352354
Score = 141 bits (156), Expect = 2e-28
Identities = 115/137 (84%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|||||| | |||| || || ||||||| ||||||||||||||||| ||| ||||||||
Sbjct 352458 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 352517
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814
||||||||||||| ||| | | | | | ||||||||||||||||||||| ||||| ||
Sbjct 352518 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 352576
Query 42815 CATCAGCAGGGACGAGG 42831
||||||||| |||||||
Sbjct 352577 CATCAGCAGAGACGAGG 352593
Score = 141 bits (156), Expect = 2e-28
Identities = 115/137 (84%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|||||| | |||| || || ||||||| ||||||||||||||||| ||| ||||||||
Sbjct 357434 GGCGAGCGCGTGGTGGCTTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 357375
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814
||||||||||||| ||| | | | | | ||||||||||||||||||||| ||||| ||
Sbjct 357374 GCCATCTTCTGGCTGAAG-AAACGCGGCCTGATGCCCGGACTCACCTTCTCCAACGAGCT 357316
Query 42815 CATCAGCAGGGACGAGG 42831
||||||||| |||||||
Sbjct 357315 CATCAGCAGAGACGAGG 357299
Score = 111 bits (122), Expect = 3e-19
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 353234 CCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAGCG 353293
Query 43130 CGTCGCCGACTACCAG 43145
||||| ||| ||||||
Sbjct 353294 CGTCGGCGAGTACCAG 353309
Score = 111 bits (122), Expect = 3e-19
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 356655 CCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAGCG 356596
Query 43130 CGTCGCCGACTACCAG 43145
||||| ||| ||||||
Sbjct 356595 CGTCGGCGAGTACCAG 356580
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
|||||||| ||||| || |||||||| || ||||||||||||| |||||||||||||||
Sbjct 357604 CTGTTCAACGCCATCGAAACGATGCCGTGTGTCAAGAAGAAGGCCGACTGGGCGCTCAAC 357545
Query 42669 TGGATCG 42675
|||||||
Sbjct 357544 TGGATCG 357538
>seq1247
Length=1231281
Score = 120 bits (132), Expect = 6e-22
Identities = 109/135 (81%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757
|||| | || || || ||| | || || ||||||||||||||||| ||| |||||||| |
Sbjct 216483 CGAGCGACTTGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGC 216424
Query 42758 CATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCA 42816
||||| |||| | ||| | | ||| || |||||||| ||||||| ||| ||||| ||||
Sbjct 216423 CATCTACTGGTTGAAGAAAAGAGGCCTC-ATGCCCGGCCTCACCTACTCCAACGAGCTCA 216365
Query 42817 TCAGCAGGGACGAGG 42831
||||| |||||||||
Sbjct 216364 TCAGCCGGGACGAGG 216350
>seq354
Length=3526367
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070
|||||||||||| |||||||| | || ||| ||||| |||| ||||||||| ||
Sbjct 779315 CATGAAGAGGTCTGGGATCCACATAGCAAAGAAAAGGTCTCTGGCCCTCTGCTCCTCTTT 779374
Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130
|| ||||||||| | | ||||| ||||||||| || |||| ||||| ||||| | |||
Sbjct 779375 ACCCGTGTTCTTCTTTAACTCCAGAAAGTCAAATACATCGAAATGCCACGGCTCTAAGTA 779434
Query 245131 GACAGCGAGGGCGCCGGG 245148
|||||||| || |||||
Sbjct 779435 GACAGCGAATGCACCGGG 779452
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070
|||||||||||| |||||||| | || ||| ||||| |||| ||||||||| ||
Sbjct 781734 CATGAAGAGGTCTGGGATCCACATAGCAAAGAAAAGGTCTCTGGCCCTCTGCTCCTCTTT 781793
Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130
|| ||||||||| | | ||||| ||||||||| || |||| ||||| ||||| | |||
Sbjct 781794 ACCCGTGTTCTTCTTTAACTCCAGAAAGTCAAATACATCGAAATGCCACGGCTCTAAGTA 781853
Query 245131 GACAGCGAGGGCGCCGGG 245148
|||||||| || |||||
Sbjct 781854 GACAGCGAATGCACCGGG 781871
Score = 87.8 bits (96), Expect = 3e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778
|||| |||| ||||||||||||||| | || ||| | |||||||| || |||| ||| |
Sbjct 778857 TGGTATACTCGACAATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCT 778916
Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816
| ||| ||| | ||||| ||||||||||| ||||||
Sbjct 778917 GGTTGCTCTTCCCATTGCAAGCGTCCTTGTACAGCATG 778954
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
|||||||| || ||||| ||||| | ||| ||||| |||||| || | ||||||
Sbjct 777051 ACCTGAAATTCCCCCGAGAGCACTCTGCGGGTGTAGATATTGCTGGTGTAGGCCTCGATA 777110
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
||| | || || || ||||| || ||| || || |||||||||| || |||| |
Sbjct 777111 GACTCATTATTCCCGAGGATCTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAAGAGCAAA 777170
Query 244217 CTGTTCCTCACGCCGTGCCT 244236
||||| || |||||||||||
Sbjct 777171 CTGTTTCTAACGCCGTGCCT 777190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943897992921520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |